Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS23880

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS23875 and RS_RS23880 are separated by 12 nucleotidesRS_RS23880 and RS_RS23885 are separated by 75 nucleotidesRS_RS23885 and RS_RS23890 overlap by 1 nucleotides RS_RS23875: RS_RS23875 - porin, at 1,761,476 to 1,762,519 _RS23875 RS_RS23880: RS_RS23880 - 3-keto-5-aminohexanoate cleavage protein, at 1,762,532 to 1,764,412 _RS23880 RS_RS23885: RS_RS23885 - protein phosphatase CheZ, at 1,764,488 to 1,765,150 _RS23885 RS_RS23890: RS_RS23890 - chemotaxis protein CheY, at 1,765,150 to 1,765,551 _RS23890 Position (kb) 1762 1763 1764 1765Strain fitness (log2 ratio) -3 -2 -1 0 1at 1761.551 kb on + strandat 1761.551 kb on + strandat 1761.552 kb on - strandat 1761.579 kb on - strandat 1761.821 kb on + strand, within RS_RS23875at 1761.821 kb on + strand, within RS_RS23875at 1761.822 kb on - strand, within RS_RS23875at 1761.851 kb on + strand, within RS_RS23875at 1761.905 kb on + strand, within RS_RS23875at 1761.905 kb on + strand, within RS_RS23875at 1761.905 kb on + strand, within RS_RS23875at 1761.905 kb on + strand, within RS_RS23875at 1761.906 kb on - strand, within RS_RS23875at 1761.906 kb on - strand, within RS_RS23875at 1761.906 kb on - strand, within RS_RS23875at 1761.938 kb on + strand, within RS_RS23875at 1761.939 kb on - strand, within RS_RS23875at 1761.939 kb on - strand, within RS_RS23875at 1761.939 kb on - strand, within RS_RS23875at 1761.939 kb on - strand, within RS_RS23875at 1761.939 kb on - strand, within RS_RS23875at 1761.944 kb on + strand, within RS_RS23875at 1761.945 kb on - strand, within RS_RS23875at 1761.977 kb on + strand, within RS_RS23875at 1761.977 kb on + strand, within RS_RS23875at 1761.980 kb on - strand, within RS_RS23875at 1761.980 kb on - strand, within RS_RS23875at 1762.040 kb on + strand, within RS_RS23875at 1762.040 kb on + strand, within RS_RS23875at 1762.040 kb on + strand, within RS_RS23875at 1762.040 kb on + strand, within RS_RS23875at 1762.041 kb on - strand, within RS_RS23875at 1762.160 kb on + strand, within RS_RS23875at 1762.160 kb on + strand, within RS_RS23875at 1762.160 kb on + strand, within RS_RS23875at 1762.161 kb on - strand, within RS_RS23875at 1762.161 kb on - strand, within RS_RS23875at 1762.184 kb on + strand, within RS_RS23875at 1762.184 kb on + strand, within RS_RS23875at 1762.185 kb on - strand, within RS_RS23875at 1762.223 kb on + strand, within RS_RS23875at 1762.224 kb on - strand, within RS_RS23875at 1762.242 kb on - strand, within RS_RS23875at 1762.362 kb on - strand, within RS_RS23875at 1762.404 kb on - strand, within RS_RS23875at 1762.404 kb on - strand, within RS_RS23875at 1763.062 kb on - strand, within RS_RS23880at 1763.177 kb on + strand, within RS_RS23880at 1763.738 kb on + strand, within RS_RS23880at 1763.738 kb on + strand, within RS_RS23880at 1763.739 kb on - strand, within RS_RS23880at 1763.739 kb on - strand, within RS_RS23880at 1763.739 kb on - strand, within RS_RS23880at 1763.771 kb on + strand, within RS_RS23880at 1763.771 kb on + strand, within RS_RS23880at 1763.772 kb on - strand, within RS_RS23880at 1763.897 kb on + strand, within RS_RS23880at 1764.059 kb on + strand, within RS_RS23880at 1764.060 kb on - strand, within RS_RS23880at 1764.060 kb on - strand, within RS_RS23880at 1764.060 kb on - strand, within RS_RS23880at 1764.167 kb on + strand, within RS_RS23880at 1764.167 kb on + strand, within RS_RS23880at 1764.167 kb on + strand, within RS_RS23880at 1764.168 kb on - strand, within RS_RS23880at 1764.168 kb on - strand, within RS_RS23880at 1764.168 kb on - strand, within RS_RS23880at 1764.168 kb on - strand, within RS_RS23880at 1764.171 kb on - strand, within RS_RS23880at 1764.243 kb on - strandat 1764.333 kb on - strandat 1764.958 kb on - strand, within RS_RS23885at 1764.958 kb on - strand, within RS_RS23885at 1765.151 kb on + strandat 1765.230 kb on - strand, within RS_RS23890at 1765.230 kb on - strand, within RS_RS23890at 1765.230 kb on - strand, within RS_RS23890

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet
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1,761,551 + -0.6
1,761,551 + +0.2
1,761,552 - +0.7
1,761,579 - -0.6
1,761,821 + RS_RS23875 0.33 +0.1
1,761,821 + RS_RS23875 0.33 +1.5
1,761,822 - RS_RS23875 0.33 -0.1
1,761,851 + RS_RS23875 0.36 -0.6
1,761,905 + RS_RS23875 0.41 -0.5
1,761,905 + RS_RS23875 0.41 +0.5
1,761,905 + RS_RS23875 0.41 +1.5
1,761,905 + RS_RS23875 0.41 -0.4
1,761,906 - RS_RS23875 0.41 +0.1
1,761,906 - RS_RS23875 0.41 +0.8
1,761,906 - RS_RS23875 0.41 +0.2
1,761,938 + RS_RS23875 0.44 -0.1
1,761,939 - RS_RS23875 0.44 -0.6
1,761,939 - RS_RS23875 0.44 -0.4
1,761,939 - RS_RS23875 0.44 +0.2
1,761,939 - RS_RS23875 0.44 -1.0
1,761,939 - RS_RS23875 0.44 -1.4
1,761,944 + RS_RS23875 0.45 -0.1
1,761,945 - RS_RS23875 0.45 +0.1
1,761,977 + RS_RS23875 0.48 -0.3
1,761,977 + RS_RS23875 0.48 +0.5
1,761,980 - RS_RS23875 0.48 -1.8
1,761,980 - RS_RS23875 0.48 -0.4
1,762,040 + RS_RS23875 0.54 +1.5
1,762,040 + RS_RS23875 0.54 -0.3
1,762,040 + RS_RS23875 0.54 +0.1
1,762,040 + RS_RS23875 0.54 +0.1
1,762,041 - RS_RS23875 0.54 +0.5
1,762,160 + RS_RS23875 0.66 -0.1
1,762,160 + RS_RS23875 0.66 +1.5
1,762,160 + RS_RS23875 0.66 +1.5
1,762,161 - RS_RS23875 0.66 -0.4
1,762,161 - RS_RS23875 0.66 +0.2
1,762,184 + RS_RS23875 0.68 -0.0
1,762,184 + RS_RS23875 0.68 -0.1
1,762,185 - RS_RS23875 0.68 -0.6
1,762,223 + RS_RS23875 0.72 -1.3
1,762,224 - RS_RS23875 0.72 +0.5
1,762,242 - RS_RS23875 0.73 -0.1
1,762,362 - RS_RS23875 0.85 -0.3
1,762,404 - RS_RS23875 0.89 -0.7
1,762,404 - RS_RS23875 0.89 +0.9
1,763,062 - RS_RS23880 0.28 -0.2
1,763,177 + RS_RS23880 0.34 -0.1
1,763,738 + RS_RS23880 0.64 +0.1
1,763,738 + RS_RS23880 0.64 -0.6
1,763,739 - RS_RS23880 0.64 +0.0
1,763,739 - RS_RS23880 0.64 -0.7
1,763,739 - RS_RS23880 0.64 +0.5
1,763,771 + RS_RS23880 0.66 +0.0
1,763,771 + RS_RS23880 0.66 +0.1
1,763,772 - RS_RS23880 0.66 +1.5
1,763,897 + RS_RS23880 0.73 +0.2
1,764,059 + RS_RS23880 0.81 -0.2
1,764,060 - RS_RS23880 0.81 -0.8
1,764,060 - RS_RS23880 0.81 -0.7
1,764,060 - RS_RS23880 0.81 -0.1
1,764,167 + RS_RS23880 0.87 -0.4
1,764,167 + RS_RS23880 0.87 +0.2
1,764,167 + RS_RS23880 0.87 +1.5
1,764,168 - RS_RS23880 0.87 +0.9
1,764,168 - RS_RS23880 0.87 +1.0
1,764,168 - RS_RS23880 0.87 +0.3
1,764,168 - RS_RS23880 0.87 -1.3
1,764,171 - RS_RS23880 0.87 +0.4
1,764,243 - +0.2
1,764,333 - +0.9
1,764,958 - RS_RS23885 0.71 -2.8
1,764,958 - RS_RS23885 0.71 -0.5
1,765,151 + -1.1
1,765,230 - RS_RS23890 0.20 -0.0
1,765,230 - RS_RS23890 0.20 -0.1
1,765,230 - RS_RS23890 0.20 +0.4

Or see this region's nucleotide sequence