Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS04610

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS04605 and RS_RS04610 are separated by 112 nucleotidesRS_RS04610 and RS_RS04615 are separated by 247 nucleotides RS_RS04605: RS_RS04605 - D-amino acid dehydrogenase small subunit, at 978,179 to 979,468 _RS04605 RS_RS04610: RS_RS04610 - AsnC family transcriptional regulator, at 979,581 to 980,078 _RS04610 RS_RS04615: RS_RS04615 - radical SAM protein, at 980,326 to 981,453 _RS04615 Position (kb) 979 980 981Strain fitness (log2 ratio) -1 0 1at 978.660 kb on + strand, within RS_RS04605at 978.702 kb on + strand, within RS_RS04605at 978.702 kb on + strand, within RS_RS04605at 978.702 kb on + strand, within RS_RS04605at 978.703 kb on - strand, within RS_RS04605at 979.128 kb on + strand, within RS_RS04605at 979.168 kb on - strand, within RS_RS04605at 979.417 kb on - strandat 979.419 kb on + strandat 979.420 kb on - strandat 979.513 kb on + strandat 979.513 kb on + strandat 979.514 kb on - strandat 979.542 kb on + strandat 979.543 kb on - strandat 979.761 kb on + strand, within RS_RS04610at 979.921 kb on - strand, within RS_RS04610at 980.016 kb on + strand, within RS_RS04610at 980.016 kb on + strand, within RS_RS04610at 980.016 kb on + strand, within RS_RS04610at 980.017 kb on - strand, within RS_RS04610at 980.017 kb on - strand, within RS_RS04610at 980.017 kb on - strand, within RS_RS04610at 980.593 kb on + strand, within RS_RS04615at 980.593 kb on + strand, within RS_RS04615at 980.593 kb on + strand, within RS_RS04615at 980.758 kb on + strand, within RS_RS04615at 980.758 kb on + strand, within RS_RS04615at 980.759 kb on - strand, within RS_RS04615

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
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978,660 + RS_RS04605 0.37 +0.4
978,702 + RS_RS04605 0.41 +0.5
978,702 + RS_RS04605 0.41 -0.6
978,702 + RS_RS04605 0.41 +0.5
978,703 - RS_RS04605 0.41 +0.6
979,128 + RS_RS04605 0.74 +0.2
979,168 - RS_RS04605 0.77 -0.1
979,417 - +0.6
979,419 + +0.4
979,420 - +1.0
979,513 + +0.8
979,513 + +0.3
979,514 - +0.8
979,542 + +0.9
979,543 - -1.5
979,761 + RS_RS04610 0.36 +0.5
979,921 - RS_RS04610 0.68 +0.5
980,016 + RS_RS04610 0.87 +0.7
980,016 + RS_RS04610 0.87 +1.2
980,016 + RS_RS04610 0.87 +0.5
980,017 - RS_RS04610 0.88 +0.5
980,017 - RS_RS04610 0.88 +0.5
980,017 - RS_RS04610 0.88 +0.6
980,593 + RS_RS04615 0.24 +0.0
980,593 + RS_RS04615 0.24 +0.0
980,593 + RS_RS04615 0.24 -0.0
980,758 + RS_RS04615 0.38 -0.2
980,758 + RS_RS04615 0.38 -0.4
980,759 - RS_RS04615 0.38 +0.1

Or see this region's nucleotide sequence