Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS03725

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS03720 and RS_RS03725 are separated by 62 nucleotidesRS_RS03725 and RS_RS03730 are separated by 187 nucleotides RS_RS03720: RS_RS03720 - YeeE/YedE family protein, at 785,213 to 786,328 _RS03720 RS_RS03725: RS_RS03725 - tRNA-Lys, at 786,391 to 786,466 _RS03725 RS_RS03730: RS_RS03730 - hypothetical protein, at 786,654 to 787,010 _RS03730 Position (kb) 786 787Strain fitness (log2 ratio) -1 0 1 2at 785.453 kb on + strand, within RS_RS03720at 785.453 kb on + strand, within RS_RS03720at 785.454 kb on - strand, within RS_RS03720at 785.454 kb on - strand, within RS_RS03720at 785.873 kb on + strand, within RS_RS03720at 785.874 kb on - strand, within RS_RS03720at 785.874 kb on - strand, within RS_RS03720at 785.874 kb on - strand, within RS_RS03720at 785.987 kb on + strand, within RS_RS03720at 785.989 kb on + strand, within RS_RS03720at 785.989 kb on + strand, within RS_RS03720at 786.019 kb on + strand, within RS_RS03720at 786.019 kb on + strand, within RS_RS03720at 786.020 kb on - strand, within RS_RS03720at 786.020 kb on - strand, within RS_RS03720at 786.710 kb on - strand, within RS_RS03730at 786.922 kb on + strand, within RS_RS03730at 786.923 kb on - strand, within RS_RS03730at 786.931 kb on + strand, within RS_RS03730at 786.932 kb on - strand, within RS_RS03730at 786.975 kb on + strandat 786.975 kb on + strandat 786.976 kb on - strandat 787.115 kb on + strandat 787.115 kb on + strandat 787.116 kb on - strandat 787.206 kb on - strandat 787.206 kb on - strandat 787.228 kb on - strandat 787.277 kb on + strandat 787.278 kb on - strandat 787.278 kb on - strandat 787.278 kb on - strandat 787.426 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
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785,453 + RS_RS03720 0.22 -0.9
785,453 + RS_RS03720 0.22 +0.5
785,454 - RS_RS03720 0.22 -1.4
785,454 - RS_RS03720 0.22 -0.8
785,873 + RS_RS03720 0.59 -0.2
785,874 - RS_RS03720 0.59 +1.4
785,874 - RS_RS03720 0.59 -0.0
785,874 - RS_RS03720 0.59 -0.0
785,987 + RS_RS03720 0.69 -0.8
785,989 + RS_RS03720 0.70 -0.8
785,989 + RS_RS03720 0.70 -0.1
786,019 + RS_RS03720 0.72 +0.6
786,019 + RS_RS03720 0.72 +1.7
786,020 - RS_RS03720 0.72 +0.1
786,020 - RS_RS03720 0.72 +0.2
786,710 - RS_RS03730 0.16 +0.6
786,922 + RS_RS03730 0.75 -0.2
786,923 - RS_RS03730 0.75 -0.3
786,931 + RS_RS03730 0.78 -1.1
786,932 - RS_RS03730 0.78 -0.3
786,975 + -0.2
786,975 + +0.5
786,976 - +0.2
787,115 + +0.2
787,115 + +0.3
787,116 - +0.7
787,206 - +0.0
787,206 - +2.4
787,228 - -0.1
787,277 + -0.1
787,278 - +1.4
787,278 - +0.0
787,278 - -0.1
787,426 + +1.8

Or see this region's nucleotide sequence