Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS03595

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS03590 and RS_RS03595 are separated by 103 nucleotidesRS_RS03595 and RS_RS03600 are separated by 8 nucleotides RS_RS03590: RS_RS03590 - bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II, at 760,616 to 761,746 _RS03590 RS_RS03595: RS_RS03595 - riboflavin synthase, at 761,850 to 762,503 _RS03595 RS_RS03600: RS_RS03600 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 762,512 to 763,624 _RS03600 Position (kb) 761 762 763Strain fitness (log2 ratio) -1 0 1at 761.821 kb on + strandat 761.821 kb on + strandat 761.822 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
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761,821 + -0.7
761,821 + -0.0
761,822 - -0.2

Or see this region's nucleotide sequence