Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS19250 and RS_RS26075 overlap by 44 nucleotides RS_RS26075 and RS_RS19255 are separated by 221 nucleotides
RS_RS19250: RS_RS19250 - transcriptional regulator GcvA, at 547,453 to 548,367
_RS19250
RS_RS26075: RS_RS26075 - hypothetical protein, at 548,324 to 548,536
_RS26075
RS_RS19255: RS_RS19255 - GntR family transcriptional regulator, at 548,758 to 549,414
_RS19255
Position (kb) 548
549 Strain fitness (log2 ratio) -1
0
1
2 at 547.469 kb on - strand at 547.677 kb on - strand, within RS_RS19250 at 547.898 kb on - strand, within RS_RS19250 at 547.954 kb on + strand, within RS_RS19250 at 547.954 kb on + strand, within RS_RS19250 at 547.954 kb on + strand, within RS_RS19250 at 547.955 kb on - strand, within RS_RS19250 at 547.955 kb on - strand, within RS_RS19250 at 547.955 kb on - strand, within RS_RS19250 at 547.976 kb on + strand, within RS_RS19250 at 547.976 kb on + strand, within RS_RS19250 at 547.976 kb on + strand, within RS_RS19250 at 547.977 kb on - strand, within RS_RS19250 at 547.977 kb on - strand, within RS_RS19250 at 548.278 kb on + strand at 548.279 kb on - strand at 548.279 kb on - strand at 548.281 kb on + strand at 548.281 kb on + strand at 548.281 kb on + strand at 548.282 kb on - strand at 548.282 kb on - strand at 548.282 kb on - strand at 548.282 kb on - strand at 548.291 kb on - strand at 548.291 kb on - strand at 548.429 kb on - strand, within RS_RS26075 at 548.465 kb on + strand at 548.525 kb on + strand at 548.525 kb on + strand at 548.525 kb on + strand at 548.525 kb on + strand at 548.525 kb on + strand at 548.525 kb on + strand at 548.525 kb on + strand at 548.525 kb on + strand at 548.526 kb on - strand at 548.526 kb on - strand at 548.526 kb on - strand at 548.526 kb on - strand at 548.526 kb on - strand at 548.526 kb on - strand at 548.526 kb on - strand at 548.526 kb on - strand at 548.526 kb on - strand at 548.529 kb on + strand at 548.529 kb on + strand at 548.529 kb on + strand at 548.529 kb on + strand at 548.530 kb on - strand at 549.422 kb on + strand at 549.422 kb on + strand at 549.422 kb on + strand at 549.422 kb on + strand at 549.422 kb on + strand at 549.423 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol remove 547,469 - -0.5 547,677 - RS_RS19250 0.24 -0.1 547,898 - RS_RS19250 0.49 +0.9 547,954 + RS_RS19250 0.55 -0.7 547,954 + RS_RS19250 0.55 -0.1 547,954 + RS_RS19250 0.55 -0.0 547,955 - RS_RS19250 0.55 -0.1 547,955 - RS_RS19250 0.55 -0.2 547,955 - RS_RS19250 0.55 +0.1 547,976 + RS_RS19250 0.57 -0.0 547,976 + RS_RS19250 0.57 -0.2 547,976 + RS_RS19250 0.57 +0.2 547,977 - RS_RS19250 0.57 +0.5 547,977 - RS_RS19250 0.57 +0.4 548,278 + -0.2 548,279 - +0.2 548,279 - +0.6 548,281 + +0.1 548,281 + +0.1 548,281 + +0.9 548,282 - +0.1 548,282 - -0.6 548,282 - -0.3 548,282 - +0.3 548,291 - +0.9 548,291 - -0.1 548,429 - RS_RS26075 0.49 +0.9 548,465 + -0.1 548,525 + -0.1 548,525 + +0.2 548,525 + +2.1 548,525 + -0.4 548,525 + +0.6 548,525 + -0.4 548,525 + -0.5 548,525 + +0.1 548,526 - -0.3 548,526 - -0.0 548,526 - -0.3 548,526 - -0.1 548,526 - -0.2 548,526 - -0.1 548,526 - -0.0 548,526 - +0.1 548,526 - +0.9 548,529 + -1.4 548,529 + +0.9 548,529 + +0.1 548,529 + +0.3 548,530 - -0.9 549,422 + +0.9 549,422 + +0.9 549,422 + +0.1 549,422 + -0.0 549,422 + +0.0 549,423 - +0.3
Or see this region's nucleotide sequence