Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS08810

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRS_RS08805 and RS_RS08810 are separated by 836 nucleotidesRS_RS08810 and RS_RS08815 are separated by 41 nucleotidesRS_RS08815 and RS_RS08820 overlap by 1 nucleotidesRS_RS08820 and RS_RS08825 are separated by 22 nucleotides RS_RS08805: RS_RS08805 - hypothetical protein, at 1,865,631 to 1,865,873 _RS08805 RS_RS08810: RS_RS08810 - peptidyl-prolyl cis-trans isomerase, at 1,866,710 to 1,867,507 _RS08810 RS_RS08815: RS_RS08815 - BolA family transcriptional regulator, at 1,867,549 to 1,867,833 _RS08815 RS_RS08820: RS_RS08820 - intracellular septation protein A, at 1,867,833 to 1,868,393 _RS08820 RS_RS08825: RS_RS08825 - peptide-methionine (R)-S-oxide reductase, at 1,868,416 to 1,868,802 _RS08825 Position (kb) 1866 1867 1868Strain fitness (log2 ratio) -1 0 1 2at 1866.153 kb on + strandat 1866.153 kb on + strandat 1866.153 kb on + strandat 1866.153 kb on + strandat 1866.153 kb on + strandat 1866.711 kb on + strandat 1866.711 kb on + strandat 1866.711 kb on + strandat 1866.952 kb on - strand, within RS_RS08810at 1866.952 kb on - strand, within RS_RS08810at 1867.114 kb on - strand, within RS_RS08810at 1867.152 kb on + strand, within RS_RS08810at 1867.197 kb on + strand, within RS_RS08810at 1867.198 kb on - strand, within RS_RS08810at 1867.198 kb on - strand, within RS_RS08810at 1867.551 kb on - strandat 1867.628 kb on + strand, within RS_RS08815at 1867.628 kb on + strand, within RS_RS08815at 1867.628 kb on + strand, within RS_RS08815at 1867.628 kb on + strand, within RS_RS08815at 1867.629 kb on - strand, within RS_RS08815at 1867.694 kb on + strand, within RS_RS08815at 1867.695 kb on - strand, within RS_RS08815at 1868.453 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
remove
1,866,153 + +0.0
1,866,153 + -0.1
1,866,153 + -0.0
1,866,153 + -0.5
1,866,153 + -0.1
1,866,711 + +0.1
1,866,711 + +2.5
1,866,711 + -0.4
1,866,952 - RS_RS08810 0.30 -0.4
1,866,952 - RS_RS08810 0.30 -0.2
1,867,114 - RS_RS08810 0.51 -1.1
1,867,152 + RS_RS08810 0.55 -0.3
1,867,197 + RS_RS08810 0.61 +0.3
1,867,198 - RS_RS08810 0.61 +0.4
1,867,198 - RS_RS08810 0.61 -0.3
1,867,551 - +0.0
1,867,628 + RS_RS08815 0.28 -0.2
1,867,628 + RS_RS08815 0.28 -0.1
1,867,628 + RS_RS08815 0.28 -1.0
1,867,628 + RS_RS08815 0.28 +0.2
1,867,629 - RS_RS08815 0.28 -0.3
1,867,694 + RS_RS08815 0.51 +0.1
1,867,695 - RS_RS08815 0.51 +0.2
1,868,453 + +0.0

Or see this region's nucleotide sequence