Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS06810

Experiment: CPG no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS06805 and RS_RS06810 are separated by 502 nucleotidesRS_RS06810 and RS_RS06815 are separated by 131 nucleotidesRS_RS06815 and RS_RS06820 are separated by 76 nucleotides RS_RS06805: RS_RS06805 - GALA protein, at 1,445,546 to 1,447,489 _RS06805 RS_RS06810: RS_RS06810 - isocitrate lyase, at 1,447,992 to 1,449,296 _RS06810 RS_RS06815: RS_RS06815 - universal stress protein, at 1,449,428 to 1,449,862 _RS06815 RS_RS06820: RS_RS06820 - LysR family transcriptional regulator, at 1,449,939 to 1,450,868 _RS06820 Position (kb) 1447 1448 1449 1450Strain fitness (log2 ratio) -1 0 1at 1447.188 kb on + strand, within RS_RS06805at 1447.189 kb on - strand, within RS_RS06805at 1447.235 kb on + strand, within RS_RS06805at 1447.236 kb on - strand, within RS_RS06805at 1447.313 kb on + strandat 1447.313 kb on + strandat 1447.314 kb on - strandat 1447.956 kb on + strandat 1448.011 kb on + strandat 1448.247 kb on + strand, within RS_RS06810at 1448.247 kb on + strand, within RS_RS06810at 1448.248 kb on - strand, within RS_RS06810at 1448.299 kb on - strand, within RS_RS06810at 1448.299 kb on - strand, within RS_RS06810at 1448.360 kb on + strand, within RS_RS06810at 1448.361 kb on - strand, within RS_RS06810at 1448.361 kb on - strand, within RS_RS06810at 1448.361 kb on - strand, within RS_RS06810at 1448.755 kb on - strand, within RS_RS06810at 1448.755 kb on - strand, within RS_RS06810at 1448.811 kb on + strand, within RS_RS06810at 1448.856 kb on + strand, within RS_RS06810at 1448.857 kb on - strand, within RS_RS06810at 1448.857 kb on - strand, within RS_RS06810at 1448.913 kb on + strand, within RS_RS06810at 1449.000 kb on + strand, within RS_RS06810at 1449.001 kb on - strand, within RS_RS06810at 1449.045 kb on + strand, within RS_RS06810at 1449.046 kb on - strand, within RS_RS06810at 1449.579 kb on + strand, within RS_RS06815at 1449.579 kb on + strand, within RS_RS06815at 1449.580 kb on - strand, within RS_RS06815at 1449.580 kb on - strand, within RS_RS06815at 1449.738 kb on + strand, within RS_RS06815at 1449.756 kb on + strand, within RS_RS06815at 1449.910 kb on - strandat 1449.976 kb on + strandat 1449.977 kb on - strandat 1449.977 kb on - strandat 1450.192 kb on - strand, within RS_RS06820

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG no stress control
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1,447,188 + RS_RS06805 0.84 +0.3
1,447,189 - RS_RS06805 0.85 +0.2
1,447,235 + RS_RS06805 0.87 +0.9
1,447,236 - RS_RS06805 0.87 +0.6
1,447,313 + +0.0
1,447,313 + +0.1
1,447,314 - -0.7
1,447,956 + -0.5
1,448,011 + -0.2
1,448,247 + RS_RS06810 0.20 -0.4
1,448,247 + RS_RS06810 0.20 -0.7
1,448,248 - RS_RS06810 0.20 -1.4
1,448,299 - RS_RS06810 0.24 +0.6
1,448,299 - RS_RS06810 0.24 +0.5
1,448,360 + RS_RS06810 0.28 +0.4
1,448,361 - RS_RS06810 0.28 +0.2
1,448,361 - RS_RS06810 0.28 +0.2
1,448,361 - RS_RS06810 0.28 -0.7
1,448,755 - RS_RS06810 0.58 -0.1
1,448,755 - RS_RS06810 0.58 -1.1
1,448,811 + RS_RS06810 0.63 -0.3
1,448,856 + RS_RS06810 0.66 +0.3
1,448,857 - RS_RS06810 0.66 -0.1
1,448,857 - RS_RS06810 0.66 +0.1
1,448,913 + RS_RS06810 0.71 +0.1
1,449,000 + RS_RS06810 0.77 -0.7
1,449,001 - RS_RS06810 0.77 -0.3
1,449,045 + RS_RS06810 0.81 +0.3
1,449,046 - RS_RS06810 0.81 +0.4
1,449,579 + RS_RS06815 0.35 -0.1
1,449,579 + RS_RS06815 0.35 -0.5
1,449,580 - RS_RS06815 0.35 +1.4
1,449,580 - RS_RS06815 0.35 -1.4
1,449,738 + RS_RS06815 0.71 -0.1
1,449,756 + RS_RS06815 0.75 +0.3
1,449,910 - -0.7
1,449,976 + -0.8
1,449,977 - -0.2
1,449,977 - +0.3
1,450,192 - RS_RS06820 0.27 -0.2

Or see this region's nucleotide sequence