Experiment: CPG no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS06805 and RS_RS06810 are separated by 502 nucleotides RS_RS06810 and RS_RS06815 are separated by 131 nucleotides RS_RS06815 and RS_RS06820 are separated by 76 nucleotides
RS_RS06805: RS_RS06805 - GALA protein, at 1,445,546 to 1,447,489
_RS06805
RS_RS06810: RS_RS06810 - isocitrate lyase, at 1,447,992 to 1,449,296
_RS06810
RS_RS06815: RS_RS06815 - universal stress protein, at 1,449,428 to 1,449,862
_RS06815
RS_RS06820: RS_RS06820 - LysR family transcriptional regulator, at 1,449,939 to 1,450,868
_RS06820
Position (kb)
1447
1448
1449
1450 Strain fitness (log2 ratio)
-1
0
1 at 1447.188 kb on + strand, within RS_RS06805 at 1447.189 kb on - strand, within RS_RS06805 at 1447.235 kb on + strand, within RS_RS06805 at 1447.236 kb on - strand, within RS_RS06805 at 1447.313 kb on + strand at 1447.313 kb on + strand at 1447.314 kb on - strand at 1447.956 kb on + strand at 1448.011 kb on + strand at 1448.247 kb on + strand, within RS_RS06810 at 1448.247 kb on + strand, within RS_RS06810 at 1448.248 kb on - strand, within RS_RS06810 at 1448.299 kb on - strand, within RS_RS06810 at 1448.299 kb on - strand, within RS_RS06810 at 1448.360 kb on + strand, within RS_RS06810 at 1448.361 kb on - strand, within RS_RS06810 at 1448.361 kb on - strand, within RS_RS06810 at 1448.361 kb on - strand, within RS_RS06810 at 1448.755 kb on - strand, within RS_RS06810 at 1448.755 kb on - strand, within RS_RS06810 at 1448.811 kb on + strand, within RS_RS06810 at 1448.856 kb on + strand, within RS_RS06810 at 1448.857 kb on - strand, within RS_RS06810 at 1448.857 kb on - strand, within RS_RS06810 at 1448.913 kb on + strand, within RS_RS06810 at 1449.000 kb on + strand, within RS_RS06810 at 1449.001 kb on - strand, within RS_RS06810 at 1449.045 kb on + strand, within RS_RS06810 at 1449.046 kb on - strand, within RS_RS06810 at 1449.579 kb on + strand, within RS_RS06815 at 1449.579 kb on + strand, within RS_RS06815 at 1449.580 kb on - strand, within RS_RS06815 at 1449.580 kb on - strand, within RS_RS06815 at 1449.738 kb on + strand, within RS_RS06815 at 1449.756 kb on + strand, within RS_RS06815 at 1449.910 kb on - strand at 1449.976 kb on + strand at 1449.977 kb on - strand at 1449.977 kb on - strand at 1450.192 kb on - strand, within RS_RS06820
Per-strain Table
Position Strand Gene LocusTag Fraction CPG no stress control remove 1,447,188 + RS_RS06805 0.84 +0.3 1,447,189 - RS_RS06805 0.85 +0.2 1,447,235 + RS_RS06805 0.87 +0.9 1,447,236 - RS_RS06805 0.87 +0.6 1,447,313 + +0.0 1,447,313 + +0.1 1,447,314 - -0.7 1,447,956 + -0.5 1,448,011 + -0.2 1,448,247 + RS_RS06810 0.20 -0.4 1,448,247 + RS_RS06810 0.20 -0.7 1,448,248 - RS_RS06810 0.20 -1.4 1,448,299 - RS_RS06810 0.24 +0.6 1,448,299 - RS_RS06810 0.24 +0.5 1,448,360 + RS_RS06810 0.28 +0.4 1,448,361 - RS_RS06810 0.28 +0.2 1,448,361 - RS_RS06810 0.28 +0.2 1,448,361 - RS_RS06810 0.28 -0.7 1,448,755 - RS_RS06810 0.58 -0.1 1,448,755 - RS_RS06810 0.58 -1.1 1,448,811 + RS_RS06810 0.63 -0.3 1,448,856 + RS_RS06810 0.66 +0.3 1,448,857 - RS_RS06810 0.66 -0.1 1,448,857 - RS_RS06810 0.66 +0.1 1,448,913 + RS_RS06810 0.71 +0.1 1,449,000 + RS_RS06810 0.77 -0.7 1,449,001 - RS_RS06810 0.77 -0.3 1,449,045 + RS_RS06810 0.81 +0.3 1,449,046 - RS_RS06810 0.81 +0.4 1,449,579 + RS_RS06815 0.35 -0.1 1,449,579 + RS_RS06815 0.35 -0.5 1,449,580 - RS_RS06815 0.35 +1.4 1,449,580 - RS_RS06815 0.35 -1.4 1,449,738 + RS_RS06815 0.71 -0.1 1,449,756 + RS_RS06815 0.75 +0.3 1,449,910 - -0.7 1,449,976 + -0.8 1,449,977 - -0.2 1,449,977 - +0.3 1,450,192 - RS_RS06820 0.27 -0.2
Or see this region's nucleotide sequence