Experiment: CPG no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS03600 and RS_RS03605 are separated by 28 nucleotides RS_RS03605 and RS_RS03610 overlap by 4 nucleotides RS_RS03610 and RS_RS03615 overlap by 1 nucleotides
RS_RS03600: RS_RS03600 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 762,512 to 763,624
_RS03600
RS_RS03605: RS_RS03605 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 763,653 to 764,213
_RS03605
RS_RS03610: RS_RS03610 - type IV pilin protein, at 764,210 to 764,641
_RS03610
RS_RS03615: RS_RS03615 - pilus assembly protein PilY, at 764,641 to 766,482
_RS03615
Position (kb) 763
764
765 Strain fitness (log2 ratio) -1
0
1 at 763.820 kb on - strand, within RS_RS03605 at 763.820 kb on - strand, within RS_RS03605 at 763.822 kb on + strand, within RS_RS03605 at 763.961 kb on - strand, within RS_RS03605 at 763.963 kb on - strand, within RS_RS03605 at 764.133 kb on + strand, within RS_RS03605 at 764.133 kb on + strand, within RS_RS03605 at 764.134 kb on - strand, within RS_RS03605 at 764.454 kb on + strand, within RS_RS03610 at 764.455 kb on - strand, within RS_RS03610 at 764.455 kb on - strand, within RS_RS03610 at 764.542 kb on - strand, within RS_RS03610 at 764.542 kb on - strand, within RS_RS03610 at 764.647 kb on + strand at 764.648 kb on - strand at 764.648 kb on - strand at 764.648 kb on - strand at 764.648 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CPG no stress control remove 763,820 - RS_RS03605 0.30 -0.5 763,820 - RS_RS03605 0.30 +0.0 763,822 + RS_RS03605 0.30 -0.1 763,961 - RS_RS03605 0.55 -0.8 763,963 - RS_RS03605 0.55 +0.2 764,133 + RS_RS03605 0.86 -0.4 764,133 + RS_RS03605 0.86 -0.2 764,134 - RS_RS03605 0.86 -0.2 764,454 + RS_RS03610 0.56 +0.5 764,455 - RS_RS03610 0.57 +0.0 764,455 - RS_RS03610 0.57 +0.4 764,542 - RS_RS03610 0.77 +0.6 764,542 - RS_RS03610 0.77 +0.1 764,647 + -0.4 764,648 - -0.1 764,648 - +0.4 764,648 - -1.2 764,648 - -1.0
Or see this region's nucleotide sequence