Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3222

Experiment: MoLS4 with L-Cysteine 1mM as (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU3221 and pgi are separated by 27 nucleotidespgi and aspB are separated by 86 nucleotides DVU3221: DVU3221 - sensor histidine kinase (TIGR), at 3,389,703 to 3,391,229 DVU3221 DVU3222: pgi - glucose-6-phosphate isomerase (TIGR), at 3,391,257 to 3,392,600 pgi DVU3223: aspB - aspartate aminotransferase (TIGR), at 3,392,687 to 3,393,859 aspB Position (kb) 3391 3392 3393Strain fitness (log2 ratio) -1 0 1 2at 3391.278 kb on - strandat 3392.734 kb on - strandat 3392.748 kb on + strandat 3392.748 kb on - strandat 3392.756 kb on - strandat 3392.888 kb on + strand, within aspBat 3392.926 kb on - strand, within aspBat 3392.956 kb on + strand, within aspBat 3392.964 kb on - strand, within aspBat 3393.101 kb on + strand, within aspBat 3393.146 kb on + strand, within aspBat 3393.218 kb on - strand, within aspBat 3393.290 kb on + strand, within aspBat 3393.292 kb on + strand, within aspBat 3393.330 kb on + strand, within aspBat 3393.338 kb on - strand, within aspBat 3393.472 kb on + strand, within aspBat 3393.477 kb on + strand, within aspBat 3393.480 kb on - strand, within aspBat 3393.485 kb on - strand, within aspBat 3393.486 kb on + strand, within aspBat 3393.506 kb on + strand, within aspBat 3393.524 kb on + strand, within aspBat 3393.530 kb on - strand, within aspBat 3393.530 kb on - strand, within aspBat 3393.543 kb on + strand, within aspBat 3393.553 kb on - strand, within aspBat 3393.596 kb on + strand, within aspB

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 1mM as (N)
remove
3,391,278 - +1.9
3,392,734 - +0.5
3,392,748 + +0.4
3,392,748 - +0.2
3,392,756 - +0.4
3,392,888 + aspB DVU3223 0.17 +0.2
3,392,926 - aspB DVU3223 0.20 -0.1
3,392,956 + aspB DVU3223 0.23 +0.3
3,392,964 - aspB DVU3223 0.24 +0.5
3,393,101 + aspB DVU3223 0.35 -0.1
3,393,146 + aspB DVU3223 0.39 +0.1
3,393,218 - aspB DVU3223 0.45 +0.7
3,393,290 + aspB DVU3223 0.51 -0.2
3,393,292 + aspB DVU3223 0.52 +0.4
3,393,330 + aspB DVU3223 0.55 -0.1
3,393,338 - aspB DVU3223 0.55 +0.3
3,393,472 + aspB DVU3223 0.67 +0.5
3,393,477 + aspB DVU3223 0.67 +0.2
3,393,480 - aspB DVU3223 0.68 +0.9
3,393,485 - aspB DVU3223 0.68 +0.1
3,393,486 + aspB DVU3223 0.68 +0.1
3,393,506 + aspB DVU3223 0.70 -0.1
3,393,524 + aspB DVU3223 0.71 +1.4
3,393,530 - aspB DVU3223 0.72 +0.4
3,393,530 - aspB DVU3223 0.72 +0.2
3,393,543 + aspB DVU3223 0.73 +0.6
3,393,553 - aspB DVU3223 0.74 +0.4
3,393,596 + aspB DVU3223 0.77 +0.4

Or see this region's nucleotide sequence