Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3210

Experiment: MoLS4 with L-Cysteine 1mM as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU3208 and thrC are separated by 132 nucleotidesthrC and nox are separated by 972 nucleotides DVU3208: DVU3208 - membrane protein, putative (TIGR), at 3,374,162 to 3,375,145 DVU3208 DVU3210: thrC - threonine synthase (TIGR), at 3,375,278 to 3,376,726 thrC DVU3212: nox - pyridine nucleotide-disulfide oxidoreductase (TIGR), at 3,377,699 to 3,379,408 nox Position (kb) 3375 3376 3377Strain fitness (log2 ratio) -1 0 1at 3374.772 kb on + strand, within DVU3208at 3374.968 kb on - strand, within DVU3208at 3375.007 kb on + strand, within DVU3208at 3375.015 kb on - strand, within DVU3208at 3375.170 kb on + strandat 3375.178 kb on + strandat 3375.236 kb on - strandat 3375.269 kb on + strandat 3376.705 kb on + strandat 3376.816 kb on - strandat 3376.945 kb on + strandat 3376.978 kb on + strandat 3376.996 kb on + strandat 3377.107 kb on - strandat 3377.108 kb on + strandat 3377.135 kb on + strandat 3377.143 kb on - strandat 3377.180 kb on + strandat 3377.188 kb on - strandat 3377.197 kb on - strandat 3377.202 kb on + strandat 3377.209 kb on - strandat 3377.209 kb on - strandat 3377.257 kb on - strandat 3377.257 kb on - strandat 3377.366 kb on - strandat 3377.377 kb on - strandat 3377.404 kb on + strandat 3377.462 kb on + strandat 3377.463 kb on + strandat 3377.512 kb on - strandat 3377.548 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 1mM as (N)
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3,374,772 + DVU3208 0.62 -0.6
3,374,968 - DVU3208 0.82 +0.3
3,375,007 + DVU3208 0.86 -1.3
3,375,015 - DVU3208 0.87 +0.9
3,375,170 + +0.1
3,375,178 + -1.2
3,375,236 - -0.3
3,375,269 + -1.0
3,376,705 + +0.5
3,376,816 - +0.3
3,376,945 + +0.6
3,376,978 + -0.7
3,376,996 + -0.4
3,377,107 - +1.2
3,377,108 + -0.2
3,377,135 + -0.3
3,377,143 - +0.2
3,377,180 + -0.4
3,377,188 - +0.2
3,377,197 - -0.6
3,377,202 + -0.6
3,377,209 - -1.4
3,377,209 - +0.6
3,377,257 - +0.2
3,377,257 - -1.0
3,377,366 - +1.2
3,377,377 - +0.0
3,377,404 + +0.1
3,377,462 + -0.7
3,377,463 + -0.7
3,377,512 - -0.4
3,377,548 - -0.1

Or see this region's nucleotide sequence