Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3048

Experiment: MoLS4 with L-Cysteine 1mM as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU3047 and asd are separated by 258 nucleotidesasd and DVU3049 are separated by 46 nucleotidesDVU3049 and DVU3050 are separated by 123 nucleotides DVU3047: DVU3047 - aminotransferase, class IV (TIGR), at 3,173,003 to 3,173,950 DVU3047 DVU3048: asd - aspartate-semialdehyde dehydrogenase (TIGR), at 3,174,209 to 3,175,258 asd DVU3049: DVU3049 - hemerythrin family protein (TIGR), at 3,175,305 to 3,175,718 DVU3049 DVU3050: DVU3050 - membrane protein, putative (TIGR), at 3,175,842 to 3,176,276 DVU3050 Position (kb) 3174 3175 3176Strain fitness (log2 ratio) -2 -1 0 1at 3173.282 kb on - strand, within DVU3047at 3173.519 kb on + strand, within DVU3047at 3173.539 kb on + strand, within DVU3047at 3173.660 kb on - strand, within DVU3047at 3173.670 kb on - strand, within DVU3047at 3173.681 kb on - strand, within DVU3047at 3173.802 kb on - strand, within DVU3047at 3173.871 kb on - strandat 3173.872 kb on + strandat 3173.941 kb on - strandat 3173.991 kb on - strandat 3174.115 kb on + strandat 3174.123 kb on - strandat 3174.194 kb on + strandat 3174.195 kb on - strandat 3175.267 kb on - strandat 3175.274 kb on - strandat 3175.336 kb on - strandat 3175.389 kb on + strand, within DVU3049at 3175.389 kb on - strand, within DVU3049at 3175.431 kb on + strand, within DVU3049at 3175.522 kb on + strand, within DVU3049at 3175.522 kb on + strand, within DVU3049at 3175.530 kb on - strand, within DVU3049at 3175.619 kb on - strand, within DVU3049at 3175.744 kb on + strandat 3175.794 kb on - strandat 3175.794 kb on - strandat 3175.831 kb on + strandat 3175.839 kb on - strandat 3175.899 kb on - strand, within DVU3050at 3175.924 kb on - strand, within DVU3050at 3175.980 kb on - strand, within DVU3050at 3175.995 kb on - strand, within DVU3050at 3176.234 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 1mM as (N)
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3,173,282 - DVU3047 0.29 -0.2
3,173,519 + DVU3047 0.54 -0.6
3,173,539 + DVU3047 0.57 +0.2
3,173,660 - DVU3047 0.69 +0.2
3,173,670 - DVU3047 0.70 -0.9
3,173,681 - DVU3047 0.72 -0.1
3,173,802 - DVU3047 0.84 +0.2
3,173,871 - -1.1
3,173,872 + -0.2
3,173,941 - -0.2
3,173,991 - -0.4
3,174,115 + -0.1
3,174,123 - +0.9
3,174,194 + +0.6
3,174,195 - +0.4
3,175,267 - -0.4
3,175,274 - -0.7
3,175,336 - -1.8
3,175,389 + DVU3049 0.20 -0.4
3,175,389 - DVU3049 0.20 +1.5
3,175,431 + DVU3049 0.30 +0.1
3,175,522 + DVU3049 0.52 -0.8
3,175,522 + DVU3049 0.52 +0.5
3,175,530 - DVU3049 0.54 -0.3
3,175,619 - DVU3049 0.76 -2.2
3,175,744 + -1.8
3,175,794 - -0.8
3,175,794 - -0.6
3,175,831 + -1.1
3,175,839 - +1.2
3,175,899 - DVU3050 0.13 +0.2
3,175,924 - DVU3050 0.19 -0.6
3,175,980 - DVU3050 0.32 -0.1
3,175,995 - DVU3050 0.35 -0.8
3,176,234 - -0.1

Or see this region's nucleotide sequence