Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2521

Experiment: MoLS4 with L-Cysteine 1mM as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrplM and rpsI are separated by 18 nucleotidesrpsI and aroK-2 are separated by 551 nucleotidesaroK-2 and DVU2522 overlap by 8 nucleotidesDVU2522 and DVU2523 are separated by 29 nucleotides DVU2518: rplM - ribosomal protein L13 (TIGR), at 2,632,092 to 2,632,526 rplM DVU2519: rpsI - ribosomal protein S9 (TIGR), at 2,632,545 to 2,632,937 rpsI DVU2521: aroK-2 - shikimate kinase (TIGR), at 2,633,489 to 2,634,031 aroK-2 DVU2522: DVU2522 - hypothetical protein (TIGR), at 2,634,024 to 2,634,626 DVU2522 DVU2523: DVU2523 - lipoprotein, putative (TIGR), at 2,634,656 to 2,635,132 DVU2523 Position (kb) 2633 2634 2635Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2633.070 kb on + strandat 2633.073 kb on + strandat 2633.180 kb on + strandat 2633.225 kb on - strandat 2633.246 kb on - strandat 2633.281 kb on - strandat 2633.355 kb on - strandat 2633.401 kb on + strandat 2633.437 kb on - strandat 2634.073 kb on - strandat 2634.128 kb on + strand, within DVU2522at 2634.243 kb on - strand, within DVU2522at 2634.243 kb on - strand, within DVU2522at 2634.271 kb on - strand, within DVU2522at 2634.278 kb on + strand, within DVU2522at 2634.286 kb on - strand, within DVU2522at 2634.286 kb on - strand, within DVU2522at 2634.322 kb on - strand, within DVU2522at 2634.342 kb on - strand, within DVU2522at 2634.371 kb on + strand, within DVU2522at 2634.468 kb on - strand, within DVU2522at 2634.468 kb on - strand, within DVU2522at 2634.507 kb on - strand, within DVU2522at 2634.509 kb on + strand, within DVU2522at 2634.509 kb on + strand, within DVU2522at 2634.517 kb on - strand, within DVU2522at 2634.517 kb on - strand, within DVU2522at 2634.530 kb on + strand, within DVU2522at 2634.579 kb on + strandat 2634.587 kb on - strandat 2634.602 kb on + strandat 2634.610 kb on - strandat 2634.782 kb on + strand, within DVU2523at 2634.800 kb on - strand, within DVU2523at 2634.825 kb on - strand, within DVU2523at 2634.907 kb on - strand, within DVU2523at 2634.971 kb on - strand, within DVU2523

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 1mM as (N)
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2,633,070 + -3.1
2,633,073 + -0.4
2,633,180 + -1.1
2,633,225 - +0.2
2,633,246 - +0.4
2,633,281 - -0.4
2,633,355 - -0.2
2,633,401 + +0.8
2,633,437 - +0.6
2,634,073 - -0.2
2,634,128 + DVU2522 0.17 -0.3
2,634,243 - DVU2522 0.36 -0.3
2,634,243 - DVU2522 0.36 -0.8
2,634,271 - DVU2522 0.41 +0.0
2,634,278 + DVU2522 0.42 -0.5
2,634,286 - DVU2522 0.43 +0.5
2,634,286 - DVU2522 0.43 -0.1
2,634,322 - DVU2522 0.49 +0.8
2,634,342 - DVU2522 0.53 -0.5
2,634,371 + DVU2522 0.58 -0.6
2,634,468 - DVU2522 0.74 -0.3
2,634,468 - DVU2522 0.74 -0.5
2,634,507 - DVU2522 0.80 -0.1
2,634,509 + DVU2522 0.80 +1.0
2,634,509 + DVU2522 0.80 -0.7
2,634,517 - DVU2522 0.82 +1.4
2,634,517 - DVU2522 0.82 +0.2
2,634,530 + DVU2522 0.84 +1.8
2,634,579 + -0.2
2,634,587 - -0.6
2,634,602 + -0.4
2,634,610 - +0.6
2,634,782 + DVU2523 0.26 +0.6
2,634,800 - DVU2523 0.30 +0.0
2,634,825 - DVU2523 0.35 -0.2
2,634,907 - DVU2523 0.53 -3.0
2,634,971 - DVU2523 0.66 +0.6

Or see this region's nucleotide sequence