Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2143

Experiment: MoLS4 with L-Cysteine 1mM as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsurE and fba are separated by 448 nucleotidesfba and gap-2 are separated by 23 nucleotides DVU2142: surE - stationary-phase survival protein SurE (TIGR), at 2,239,541 to 2,240,293 surE DVU2143: fba - fructose-1,6-bisphosphate aldolase, class II (TIGR), at 2,240,742 to 2,241,665 fba DVU2144: gap-2 - glyceraldehyde 3-phosphate dehydrogenase (TIGR), at 2,241,689 to 2,242,690 gap-2 Position (kb) 2240 2241 2242Strain fitness (log2 ratio) -2 -1 0 1 2at 2239.792 kb on - strand, within surEat 2239.798 kb on + strand, within surEat 2239.839 kb on - strand, within surEat 2239.867 kb on + strand, within surEat 2239.878 kb on + strand, within surEat 2240.022 kb on - strand, within surEat 2240.056 kb on + strand, within surEat 2240.056 kb on + strand, within surEat 2240.056 kb on + strand, within surEat 2240.056 kb on + strand, within surEat 2240.091 kb on - strand, within surEat 2240.096 kb on + strand, within surEat 2240.121 kb on - strand, within surEat 2240.126 kb on - strand, within surEat 2240.126 kb on - strand, within surEat 2240.126 kb on - strand, within surEat 2240.135 kb on + strand, within surEat 2240.213 kb on + strand, within surEat 2240.266 kb on + strandat 2240.328 kb on + strandat 2240.328 kb on + strandat 2240.329 kb on + strandat 2240.336 kb on - strandat 2240.374 kb on - strandat 2240.417 kb on - strandat 2240.432 kb on - strandat 2240.442 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 1mM as (N)
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2,239,792 - surE DVU2142 0.33 -0.2
2,239,798 + surE DVU2142 0.34 -0.8
2,239,839 - surE DVU2142 0.40 -0.4
2,239,867 + surE DVU2142 0.43 -0.1
2,239,878 + surE DVU2142 0.45 +2.2
2,240,022 - surE DVU2142 0.64 -0.4
2,240,056 + surE DVU2142 0.68 -0.4
2,240,056 + surE DVU2142 0.68 -0.1
2,240,056 + surE DVU2142 0.68 +0.6
2,240,056 + surE DVU2142 0.68 -1.8
2,240,091 - surE DVU2142 0.73 -0.5
2,240,096 + surE DVU2142 0.74 -0.6
2,240,121 - surE DVU2142 0.77 -1.0
2,240,126 - surE DVU2142 0.78 +0.8
2,240,126 - surE DVU2142 0.78 -0.4
2,240,126 - surE DVU2142 0.78 +0.1
2,240,135 + surE DVU2142 0.79 -0.3
2,240,213 + surE DVU2142 0.89 +1.2
2,240,266 + -0.5
2,240,328 + +0.5
2,240,328 + +0.2
2,240,329 + -0.5
2,240,336 - -0.2
2,240,374 - +0.1
2,240,417 - +1.1
2,240,432 - -0.1
2,240,442 - -0.2

Or see this region's nucleotide sequence