Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1868

Experiment: MoLS4 with L-Cysteine 1mM as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1866 and dapF are separated by 25 nucleotidesdapF and dapA are separated by 55 nucleotidesdapA and DVU1869 are separated by 372 nucleotides DVU1866: DVU1866 - hypothetical protein (TIGR), at 1,931,793 to 1,932,494 DVU1866 DVU1867: dapF - diaminopimelate epimerase (TIGR), at 1,932,520 to 1,933,368 dapF DVU1868: dapA - dihydrodipicolinate synthase (TIGR), at 1,933,424 to 1,934,302 dapA DVU1869: DVU1869 - methyl-accepting chemotaxis protein (TIGR), at 1,934,675 to 1,936,990 DVU1869 Position (kb) 1933 1934 1935Strain fitness (log2 ratio) -2 -1 0 1 2at 1932.466 kb on + strandat 1932.511 kb on - strandat 1933.332 kb on + strandat 1933.360 kb on - strandat 1933.362 kb on + strandat 1934.305 kb on + strandat 1934.305 kb on - strandat 1934.474 kb on + strandat 1934.484 kb on + strandat 1934.574 kb on + strandat 1934.592 kb on + strandat 1934.602 kb on + strandat 1934.608 kb on - strandat 1934.696 kb on - strandat 1934.728 kb on - strandat 1934.791 kb on - strandat 1934.811 kb on - strandat 1934.811 kb on - strandat 1934.838 kb on + strandat 1934.861 kb on - strandat 1934.884 kb on + strandat 1934.898 kb on - strandat 1935.033 kb on + strand, within DVU1869at 1935.050 kb on - strand, within DVU1869at 1935.174 kb on - strand, within DVU1869at 1935.254 kb on - strand, within DVU1869at 1935.279 kb on + strand, within DVU1869

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 1mM as (N)
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1,932,466 + -0.4
1,932,511 - +0.4
1,933,332 + +0.3
1,933,360 - -2.4
1,933,362 + -0.4
1,934,305 + +0.0
1,934,305 - -0.4
1,934,474 + -0.1
1,934,484 + -0.0
1,934,574 + -0.9
1,934,592 + -1.6
1,934,602 + +0.4
1,934,608 - -1.3
1,934,696 - -1.5
1,934,728 - -0.3
1,934,791 - +1.1
1,934,811 - -0.2
1,934,811 - -0.5
1,934,838 + -0.3
1,934,861 - -1.6
1,934,884 + -0.5
1,934,898 - -1.3
1,935,033 + DVU1869 0.15 +2.2
1,935,050 - DVU1869 0.16 -0.7
1,935,174 - DVU1869 0.22 -0.4
1,935,254 - DVU1869 0.25 +0.2
1,935,279 + DVU1869 0.26 +0.0

Or see this region's nucleotide sequence