Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1827

Experiment: MoLS4 with L-Cysteine 1mM as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1825 and DVU1826 are separated by 139 nucleotidesDVU1826 and DVU1827 are separated by 127 nucleotidesDVU1827 and gidA are separated by 2 nucleotides DVU1825: DVU1825 - amidohydrolase family protein (TIGR), at 1,890,462 to 1,891,790 DVU1825 DVU1826: DVU1826 - hypothetical protein (TIGR), at 1,891,930 to 1,892,202 DVU1826 DVU1827: DVU1827 - acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase family protein (TIGR), at 1,892,330 to 1,893,553 DVU1827 DVU1828: gidA - glucose inhibited division protein A (TIGR), at 1,893,556 to 1,895,445 gidA Position (kb) 1892 1893 1894Strain fitness (log2 ratio) -1 0 1 2 3at 1891.339 kb on - strand, within DVU1825at 1891.342 kb on + strand, within DVU1825at 1891.351 kb on - strand, within DVU1825at 1891.362 kb on - strand, within DVU1825at 1891.399 kb on + strand, within DVU1825at 1891.466 kb on - strand, within DVU1825at 1891.534 kb on + strand, within DVU1825at 1891.563 kb on + strand, within DVU1825at 1891.584 kb on - strand, within DVU1825at 1891.591 kb on + strand, within DVU1825at 1891.685 kb on + strandat 1891.690 kb on + strandat 1891.775 kb on - strandat 1891.780 kb on - strandat 1892.356 kb on + strandat 1892.525 kb on + strand, within DVU1827at 1892.586 kb on + strand, within DVU1827at 1892.594 kb on - strand, within DVU1827at 1892.694 kb on + strand, within DVU1827at 1892.696 kb on + strand, within DVU1827at 1892.974 kb on + strand, within DVU1827at 1893.185 kb on + strand, within DVU1827at 1893.185 kb on + strand, within DVU1827at 1893.193 kb on - strand, within DVU1827at 1893.434 kb on - strandat 1893.436 kb on + strandat 1893.496 kb on - strandat 1893.507 kb on + strandat 1893.531 kb on + strandat 1893.539 kb on - strandat 1893.597 kb on - strandat 1893.823 kb on + strand, within gidAat 1893.987 kb on + strand, within gidAat 1894.222 kb on + strand, within gidAat 1894.227 kb on - strand, within gidAat 1894.353 kb on - strand, within gidAat 1894.528 kb on + strand, within gidA

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 1mM as (N)
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1,891,339 - DVU1825 0.66 +0.0
1,891,342 + DVU1825 0.66 +0.1
1,891,351 - DVU1825 0.67 +0.4
1,891,362 - DVU1825 0.68 +0.2
1,891,399 + DVU1825 0.71 -0.0
1,891,466 - DVU1825 0.76 +0.5
1,891,534 + DVU1825 0.81 -0.0
1,891,563 + DVU1825 0.83 +0.3
1,891,584 - DVU1825 0.84 +0.1
1,891,591 + DVU1825 0.85 +0.9
1,891,685 + -0.2
1,891,690 + -0.6
1,891,775 - -0.3
1,891,780 - +0.4
1,892,356 + -0.1
1,892,525 + DVU1827 0.16 +0.2
1,892,586 + DVU1827 0.21 -0.0
1,892,594 - DVU1827 0.22 -0.0
1,892,694 + DVU1827 0.30 +0.5
1,892,696 + DVU1827 0.30 +0.2
1,892,974 + DVU1827 0.53 -0.7
1,893,185 + DVU1827 0.70 -0.3
1,893,185 + DVU1827 0.70 -0.4
1,893,193 - DVU1827 0.71 +0.1
1,893,434 - -0.7
1,893,436 + +0.5
1,893,496 - -1.1
1,893,507 + -0.3
1,893,531 + -1.1
1,893,539 - +0.9
1,893,597 - +2.8
1,893,823 + gidA DVU1828 0.14 +0.1
1,893,987 + gidA DVU1828 0.23 -0.0
1,894,222 + gidA DVU1828 0.35 +0.1
1,894,227 - gidA DVU1828 0.36 +1.8
1,894,353 - gidA DVU1828 0.42 -0.3
1,894,528 + gidA DVU1828 0.51 +1.3

Or see this region's nucleotide sequence