Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1609

Experiment: MoLS4 with L-Cysteine 1mM as (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntligA and dapB are separated by 161 nucleotidesdapB and nadE are separated by 0 nucleotides DVU1608: ligA - DNA ligase, NAD-dependent (TIGR), at 1,690,678 to 1,693,077 ligA DVU1609: dapB - dihydrodipicolinate reductase (TIGR), at 1,693,239 to 1,694,018 dapB DVU1610: nadE - glutamine-dependent NAD+ synthetase (TIGR), at 1,694,019 to 1,695,698 nadE Position (kb) 1693 1694 1695Strain fitness (log2 ratio) -2 -1 0 1at 1692.933 kb on - strandat 1692.981 kb on + strandat 1693.047 kb on + strandat 1693.052 kb on + strandat 1693.069 kb on - strandat 1693.079 kb on - strandat 1693.079 kb on - strandat 1693.160 kb on - strandat 1693.160 kb on - strandat 1693.236 kb on + strandat 1693.595 kb on - strand, within dapBat 1693.671 kb on - strand, within dapBat 1693.712 kb on + strand, within dapBat 1693.727 kb on - strand, within dapBat 1693.864 kb on + strand, within dapBat 1693.874 kb on + strand, within dapBat 1693.992 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 1mM as (N)
remove
1,692,933 - +1.3
1,692,981 + -1.0
1,693,047 + +0.1
1,693,052 + -2.0
1,693,069 - -1.5
1,693,079 - -0.2
1,693,079 - -0.0
1,693,160 - +0.2
1,693,160 - +0.3
1,693,236 + -1.9
1,693,595 - dapB DVU1609 0.46 -0.7
1,693,671 - dapB DVU1609 0.55 -0.3
1,693,712 + dapB DVU1609 0.61 -1.8
1,693,727 - dapB DVU1609 0.63 -1.3
1,693,864 + dapB DVU1609 0.80 -1.4
1,693,874 + dapB DVU1609 0.81 -1.0
1,693,992 + -0.3

Or see this region's nucleotide sequence