Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1531

Experiment: MoLS4 with L-Cysteine 1mM as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1530 and DVU1531 are separated by 125 nucleotidesDVU1531 and coaD overlap by 25 nucleotidescoaD and miaA overlap by 4 nucleotides DVU1530: DVU1530 - metallo-beta-lactamase family protein (TIGR), at 1,598,015 to 1,599,625 DVU1530 DVU1531: DVU1531 - methyltransferase, putative (TIGR), at 1,599,751 to 1,600,323 DVU1531 DVU1532: coaD - pantetheine-phosphate adenylyltransferase (TIGR), at 1,600,299 to 1,600,859 coaD DVU1533: miaA - tRNA delta(2)-isopentenylpyrophosphate transferase (TIGR), at 1,600,856 to 1,601,785 miaA Position (kb) 1599 1600 1601Strain fitness (log2 ratio) -1 0 1at 1598.785 kb on + strand, within DVU1530at 1598.785 kb on + strand, within DVU1530at 1598.793 kb on + strand, within DVU1530at 1598.860 kb on + strand, within DVU1530at 1598.860 kb on + strand, within DVU1530at 1599.136 kb on - strand, within DVU1530at 1599.205 kb on + strand, within DVU1530at 1599.306 kb on - strand, within DVU1530at 1599.390 kb on + strand, within DVU1530at 1599.390 kb on + strand, within DVU1530at 1599.496 kb on + strandat 1599.504 kb on - strandat 1599.544 kb on + strandat 1599.552 kb on - strandat 1600.007 kb on + strand, within DVU1531at 1600.059 kb on + strand, within DVU1531at 1600.177 kb on - strand, within DVU1531at 1600.189 kb on - strand, within DVU1531at 1600.206 kb on + strand, within DVU1531at 1600.250 kb on + strand, within DVU1531at 1600.258 kb on - strand, within DVU1531at 1600.806 kb on - strandat 1600.853 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 1mM as (N)
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1,598,785 + DVU1530 0.48 -0.1
1,598,785 + DVU1530 0.48 +0.0
1,598,793 + DVU1530 0.48 -1.4
1,598,860 + DVU1530 0.52 +1.2
1,598,860 + DVU1530 0.52 -0.1
1,599,136 - DVU1530 0.70 -1.6
1,599,205 + DVU1530 0.74 +0.3
1,599,306 - DVU1530 0.80 -1.0
1,599,390 + DVU1530 0.85 +0.1
1,599,390 + DVU1530 0.85 +0.7
1,599,496 + -1.5
1,599,504 - +1.0
1,599,544 + -0.6
1,599,552 - -0.3
1,600,007 + DVU1531 0.45 -0.6
1,600,059 + DVU1531 0.54 -1.3
1,600,177 - DVU1531 0.74 -1.0
1,600,189 - DVU1531 0.76 -1.6
1,600,206 + DVU1531 0.79 -0.7
1,600,250 + DVU1531 0.87 -0.7
1,600,258 - DVU1531 0.88 -1.7
1,600,806 - -1.3
1,600,853 + +0.2

Or see this region's nucleotide sequence