Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1035

Experiment: MoLS4 with L-Cysteine 1mM as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcinA and DVU1034 are separated by 207 nucleotidesDVU1034 and glk overlap by 1 nucleotidesglk and DVU1036 overlap by 4 nucleotidesDVU1036 and DVU1037 are separated by 30 nucleotides DVU1033: cinA - competence/damage-inducible protein CinA protein, truncation (TIGR), at 1,136,444 to 1,136,938 cinA DVU1034: DVU1034 - hypothetical protein (TIGR), at 1,137,146 to 1,137,931 DVU1034 DVU1035: glk - glucokinase, putative (TIGR), at 1,137,931 to 1,138,995 glk DVU1036: DVU1036 - membrane protein, putative (TIGR), at 1,138,992 to 1,139,876 DVU1036 DVU1037: DVU1037 - mercuric reductase, putative (TIGR), at 1,139,907 to 1,141,349 DVU1037 Position (kb) 1137 1138 1139Strain fitness (log2 ratio) -2 -1 0 1 2at 1136.995 kb on + strandat 1137.070 kb on + strandat 1137.096 kb on + strandat 1137.156 kb on + strandat 1137.246 kb on + strand, within DVU1034at 1137.256 kb on - strand, within DVU1034at 1137.308 kb on + strand, within DVU1034at 1137.358 kb on + strand, within DVU1034at 1137.366 kb on - strand, within DVU1034at 1137.366 kb on - strand, within DVU1034at 1137.366 kb on - strand, within DVU1034at 1137.443 kb on + strand, within DVU1034at 1137.683 kb on - strand, within DVU1034at 1137.743 kb on + strand, within DVU1034at 1137.922 kb on + strandat 1137.953 kb on + strandat 1137.989 kb on + strandat 1138.000 kb on + strandat 1138.027 kb on + strandat 1138.155 kb on + strand, within glkat 1138.368 kb on + strand, within glkat 1138.370 kb on - strand, within glkat 1138.395 kb on - strand, within glkat 1138.397 kb on + strand, within glkat 1138.419 kb on + strand, within glkat 1138.464 kb on - strand, within glkat 1138.512 kb on - strand, within glkat 1138.644 kb on + strand, within glkat 1138.644 kb on + strand, within glkat 1138.652 kb on - strand, within glkat 1138.832 kb on - strand, within glkat 1138.933 kb on + strandat 1138.968 kb on + strandat 1139.084 kb on - strand, within DVU1036at 1139.102 kb on + strand, within DVU1036at 1139.112 kb on - strand, within DVU1036at 1139.124 kb on - strand, within DVU1036at 1139.139 kb on + strand, within DVU1036at 1139.165 kb on - strand, within DVU1036at 1139.175 kb on + strand, within DVU1036at 1139.176 kb on + strand, within DVU1036at 1139.238 kb on - strand, within DVU1036at 1139.294 kb on + strand, within DVU1036at 1139.390 kb on - strand, within DVU1036at 1139.487 kb on + strand, within DVU1036at 1139.487 kb on + strand, within DVU1036at 1139.561 kb on + strand, within DVU1036at 1139.584 kb on - strand, within DVU1036at 1139.605 kb on + strand, within DVU1036at 1139.737 kb on - strand, within DVU1036at 1139.794 kb on + strandat 1139.808 kb on - strandat 1139.870 kb on + strandat 1139.885 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 1mM as (N)
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1,136,995 + -1.3
1,137,070 + +0.1
1,137,096 + -0.6
1,137,156 + -0.8
1,137,246 + DVU1034 0.13 -0.4
1,137,256 - DVU1034 0.14 -0.9
1,137,308 + DVU1034 0.21 +0.2
1,137,358 + DVU1034 0.27 -0.6
1,137,366 - DVU1034 0.28 +1.6
1,137,366 - DVU1034 0.28 -0.3
1,137,366 - DVU1034 0.28 +2.2
1,137,443 + DVU1034 0.38 -0.4
1,137,683 - DVU1034 0.68 +1.2
1,137,743 + DVU1034 0.76 +0.0
1,137,922 + -2.0
1,137,953 + -0.3
1,137,989 + -0.1
1,138,000 + -0.5
1,138,027 + -0.1
1,138,155 + glk DVU1035 0.21 +0.1
1,138,368 + glk DVU1035 0.41 +1.0
1,138,370 - glk DVU1035 0.41 -0.5
1,138,395 - glk DVU1035 0.44 -0.9
1,138,397 + glk DVU1035 0.44 +0.4
1,138,419 + glk DVU1035 0.46 +1.2
1,138,464 - glk DVU1035 0.50 +0.4
1,138,512 - glk DVU1035 0.55 -1.8
1,138,644 + glk DVU1035 0.67 -1.4
1,138,644 + glk DVU1035 0.67 -0.9
1,138,652 - glk DVU1035 0.68 +0.4
1,138,832 - glk DVU1035 0.85 +0.6
1,138,933 + +0.0
1,138,968 + -0.9
1,139,084 - DVU1036 0.10 +0.2
1,139,102 + DVU1036 0.12 -0.3
1,139,112 - DVU1036 0.14 -0.2
1,139,124 - DVU1036 0.15 +1.2
1,139,139 + DVU1036 0.17 -1.6
1,139,165 - DVU1036 0.20 -0.8
1,139,175 + DVU1036 0.21 -0.1
1,139,176 + DVU1036 0.21 +0.8
1,139,238 - DVU1036 0.28 +0.5
1,139,294 + DVU1036 0.34 -0.4
1,139,390 - DVU1036 0.45 +0.0
1,139,487 + DVU1036 0.56 -0.3
1,139,487 + DVU1036 0.56 +1.1
1,139,561 + DVU1036 0.64 -0.5
1,139,584 - DVU1036 0.67 -0.2
1,139,605 + DVU1036 0.69 +0.1
1,139,737 - DVU1036 0.84 -0.3
1,139,794 + +0.7
1,139,808 - +0.2
1,139,870 + -1.0
1,139,885 + -0.0

Or see this region's nucleotide sequence