Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0007

Experiment: MoLS4 with L-Cysteine 1mM as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0005 and DVU0006 are separated by 292 nucleotidesDVU0006 and asnS are separated by 174 nucleotidesasnS and DVU0008 are separated by 157 nucleotidesDVU0008 and dctM are separated by 460 nucleotides DVU0005: DVU0005 - lipoprotein, putative (TIGR), at 7,835 to 8,620 DVU0005 DVU0006: DVU0006 - universal stress protein family (TIGR), at 8,913 to 9,377 DVU0006 DVU0007: asnS - asparaginyl-tRNA synthetase (TIGR), at 9,552 to 10,937 asnS DVU0008: DVU0008 - hypothetical protein (TIGR), at 11,095 to 11,220 DVU0008 DVU0009: dctM - DedA family protein (TIGR), at 11,681 to 12,961 dctM Position (kb) 9 10 11Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 8.558 kb on - strandat 8.558 kb on - strandat 8.728 kb on - strandat 8.731 kb on + strandat 8.735 kb on - strandat 8.739 kb on - strandat 8.744 kb on - strandat 8.759 kb on + strandat 8.801 kb on - strandat 8.889 kb on - strandat 8.891 kb on - strandat 8.896 kb on + strandat 8.994 kb on + strand, within DVU0006at 9.138 kb on - strand, within DVU0006at 9.149 kb on - strand, within DVU0006at 9.184 kb on - strand, within DVU0006at 9.189 kb on + strand, within DVU0006at 9.222 kb on + strand, within DVU0006at 9.230 kb on - strand, within DVU0006at 9.301 kb on + strand, within DVU0006at 9.380 kb on - strandat 9.387 kb on - strandat 9.389 kb on + strandat 9.409 kb on - strandat 9.488 kb on + strandat 9.527 kb on + strandat 9.574 kb on - strandat 9.614 kb on - strandat 9.621 kb on - strandat 9.770 kb on + strand, within asnSat 10.006 kb on - strand, within asnSat 10.040 kb on - strand, within asnSat 10.074 kb on - strand, within asnSat 10.094 kb on + strand, within asnSat 10.115 kb on + strand, within asnSat 10.130 kb on + strand, within asnSat 10.138 kb on - strand, within asnSat 10.269 kb on + strand, within asnSat 10.269 kb on + strand, within asnSat 10.269 kb on + strand, within asnSat 10.269 kb on + strand, within asnSat 10.269 kb on + strand, within asnSat 10.270 kb on + strand, within asnSat 10.270 kb on + strand, within asnSat 10.277 kb on - strand, within asnSat 10.277 kb on - strand, within asnSat 10.277 kb on - strand, within asnSat 10.278 kb on - strand, within asnSat 10.278 kb on - strand, within asnSat 10.278 kb on - strand, within asnSat 10.278 kb on - strand, within asnSat 10.306 kb on + strand, within asnSat 10.314 kb on - strand, within asnSat 10.314 kb on - strand, within asnSat 10.316 kb on + strand, within asnSat 10.325 kb on + strand, within asnSat 10.382 kb on + strand, within asnSat 10.390 kb on - strand, within asnSat 10.422 kb on + strand, within asnSat 10.443 kb on + strand, within asnSat 10.443 kb on - strand, within asnSat 10.574 kb on + strand, within asnSat 10.576 kb on + strand, within asnSat 10.582 kb on - strand, within asnSat 10.608 kb on - strand, within asnSat 10.629 kb on - strand, within asnSat 10.629 kb on - strand, within asnSat 10.660 kb on - strand, within asnSat 10.714 kb on + strand, within asnSat 10.714 kb on + strand, within asnSat 10.738 kb on + strand, within asnSat 10.747 kb on + strand, within asnSat 10.789 kb on + strand, within asnSat 10.797 kb on - strand, within asnSat 10.805 kb on + strandat 10.887 kb on + strandat 10.956 kb on - strandat 11.040 kb on + strandat 11.045 kb on - strandat 11.069 kb on - strandat 11.076 kb on - strandat 11.202 kb on - strand, within DVU0008at 11.426 kb on + strandat 11.500 kb on - strandat 11.547 kb on - strandat 11.595 kb on + strandat 11.603 kb on - strandat 11.611 kb on + strandat 11.611 kb on + strandat 11.612 kb on - strandat 11.619 kb on - strandat 11.619 kb on - strandat 11.619 kb on - strandat 11.621 kb on + strandat 11.700 kb on + strandat 11.700 kb on + strandat 11.751 kb on + strandat 11.794 kb on - strandat 11.889 kb on - strand, within dctM

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 1mM as (N)
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8,558 - -1.2
8,558 - -0.6
8,728 - +0.4
8,731 + +1.1
8,735 - -1.7
8,739 - -0.5
8,744 - +1.1
8,759 + -0.7
8,801 - +0.7
8,889 - -0.3
8,891 - -1.5
8,896 + -0.5
8,994 + DVU0006 0.17 -0.5
9,138 - DVU0006 0.48 -1.2
9,149 - DVU0006 0.51 -3.2
9,184 - DVU0006 0.58 -0.5
9,189 + DVU0006 0.59 -0.2
9,222 + DVU0006 0.66 -0.1
9,230 - DVU0006 0.68 +1.1
9,301 + DVU0006 0.83 -0.3
9,380 - +0.5
9,387 - -0.9
9,389 + -0.5
9,409 - +1.3
9,488 + +0.1
9,527 + -2.7
9,574 - -0.1
9,614 - +0.2
9,621 - -0.2
9,770 + asnS DVU0007 0.16 -0.4
10,006 - asnS DVU0007 0.33 -0.5
10,040 - asnS DVU0007 0.35 -1.5
10,074 - asnS DVU0007 0.38 +1.1
10,094 + asnS DVU0007 0.39 -0.4
10,115 + asnS DVU0007 0.41 +1.1
10,130 + asnS DVU0007 0.42 -0.8
10,138 - asnS DVU0007 0.42 +0.5
10,269 + asnS DVU0007 0.52 -2.9
10,269 + asnS DVU0007 0.52 +0.8
10,269 + asnS DVU0007 0.52 -0.4
10,269 + asnS DVU0007 0.52 -1.7
10,269 + asnS DVU0007 0.52 +2.1
10,270 + asnS DVU0007 0.52 +0.1
10,270 + asnS DVU0007 0.52 -0.2
10,277 - asnS DVU0007 0.52 -1.3
10,277 - asnS DVU0007 0.52 +0.1
10,277 - asnS DVU0007 0.52 +0.1
10,278 - asnS DVU0007 0.52 -0.7
10,278 - asnS DVU0007 0.52 -0.5
10,278 - asnS DVU0007 0.52 -0.5
10,278 - asnS DVU0007 0.52 +0.8
10,306 + asnS DVU0007 0.54 +1.1
10,314 - asnS DVU0007 0.55 -0.7
10,314 - asnS DVU0007 0.55 +0.2
10,316 + asnS DVU0007 0.55 -0.0
10,325 + asnS DVU0007 0.56 -1.2
10,382 + asnS DVU0007 0.60 -0.5
10,390 - asnS DVU0007 0.60 -0.6
10,422 + asnS DVU0007 0.63 +0.1
10,443 + asnS DVU0007 0.64 -0.9
10,443 - asnS DVU0007 0.64 -0.6
10,574 + asnS DVU0007 0.74 -0.2
10,576 + asnS DVU0007 0.74 -0.2
10,582 - asnS DVU0007 0.74 +0.3
10,608 - asnS DVU0007 0.76 -1.1
10,629 - asnS DVU0007 0.78 -0.6
10,629 - asnS DVU0007 0.78 -0.2
10,660 - asnS DVU0007 0.80 -1.4
10,714 + asnS DVU0007 0.84 +0.1
10,714 + asnS DVU0007 0.84 +0.7
10,738 + asnS DVU0007 0.86 -0.6
10,747 + asnS DVU0007 0.86 +0.0
10,789 + asnS DVU0007 0.89 -2.8
10,797 - asnS DVU0007 0.90 +1.2
10,805 + -0.6
10,887 + -0.0
10,956 - +0.1
11,040 + -0.2
11,045 - -0.2
11,069 - +0.2
11,076 - -0.1
11,202 - DVU0008 0.85 -0.6
11,426 + +0.1
11,500 - -0.0
11,547 - -0.6
11,595 + +0.1
11,603 - -0.5
11,611 + -0.7
11,611 + -2.6
11,612 - -0.3
11,619 - -0.5
11,619 - -0.9
11,619 - +0.6
11,621 + -2.4
11,700 + -0.7
11,700 + -0.9
11,751 + -0.9
11,794 - -0.1
11,889 - dctM DVU0009 0.16 -0.2

Or see this region's nucleotide sequence