Experiment: MoLS4 with L-Cysteine 1mM as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1866 and dapF are separated by 25 nucleotides dapF and dapA are separated by 55 nucleotides dapA and DVU1869 are separated by 372 nucleotides
DVU1866: DVU1866 - hypothetical protein (TIGR), at 1,931,793 to 1,932,494
DVU1866
DVU1867: dapF - diaminopimelate epimerase (TIGR), at 1,932,520 to 1,933,368
dapF
DVU1868: dapA - dihydrodipicolinate synthase (TIGR), at 1,933,424 to 1,934,302
dapA
DVU1869: DVU1869 - methyl-accepting chemotaxis protein (TIGR), at 1,934,675 to 1,936,990
DVU1869
Position (kb)
1933
1934
1935 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1932.466 kb on + strand at 1932.511 kb on - strand at 1933.332 kb on + strand at 1933.360 kb on - strand at 1933.362 kb on + strand at 1934.305 kb on + strand at 1934.305 kb on - strand at 1934.474 kb on + strand at 1934.484 kb on + strand at 1934.574 kb on + strand at 1934.592 kb on + strand at 1934.602 kb on + strand at 1934.608 kb on - strand at 1934.696 kb on - strand at 1934.728 kb on - strand at 1934.791 kb on - strand at 1934.811 kb on - strand at 1934.811 kb on - strand at 1934.838 kb on + strand at 1934.861 kb on - strand at 1934.884 kb on + strand at 1934.898 kb on - strand at 1935.033 kb on + strand, within DVU1869 at 1935.050 kb on - strand, within DVU1869 at 1935.174 kb on - strand, within DVU1869 at 1935.254 kb on - strand, within DVU1869 at 1935.279 kb on + strand, within DVU1869
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 1mM as (N) remove 1,932,466 + -0.5 1,932,511 - -0.1 1,933,332 + +0.2 1,933,360 - -2.9 1,933,362 + +0.2 1,934,305 + -0.2 1,934,305 - -0.0 1,934,474 + -0.2 1,934,484 + -0.1 1,934,574 + -0.4 1,934,592 + -1.4 1,934,602 + +0.1 1,934,608 - -1.4 1,934,696 - -1.0 1,934,728 - -0.3 1,934,791 - +1.4 1,934,811 - +0.1 1,934,811 - -0.3 1,934,838 + +1.1 1,934,861 - -2.3 1,934,884 + -0.5 1,934,898 - -0.2 1,935,033 + DVU1869 0.15 +1.1 1,935,050 - DVU1869 0.16 +0.2 1,935,174 - DVU1869 0.22 -0.0 1,935,254 - DVU1869 0.25 +2.1 1,935,279 + DVU1869 0.26 -0.1
Or see this region's nucleotide sequence