Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1709

Experiment: MoLS4 with L-Cysteine 1mM as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1708 and hsdM are separated by 2 nucleotideshsdM and DVU1710 are separated by 12 nucleotides DVU1708: DVU1708 - conserved hypothetical protein (TIGR), at 1,782,972 to 1,783,985 DVU1708 DVU1709: hsdM - type I restriction-modification system, M subunit (TIGR), at 1,783,988 to 1,785,508 hsdM DVU1710: DVU1710 - conserved hypothetical protein (TIGR), at 1,785,521 to 1,786,099 DVU1710 Position (kb) 1783 1784 1785 1786Strain fitness (log2 ratio) -3 -2 -1 0 1at 1783.091 kb on - strand, within DVU1708at 1783.170 kb on + strand, within DVU1708at 1783.266 kb on - strand, within DVU1708at 1783.296 kb on - strand, within DVU1708at 1783.555 kb on + strand, within DVU1708at 1783.665 kb on + strand, within DVU1708at 1784.088 kb on - strandat 1784.218 kb on + strand, within hsdMat 1784.236 kb on - strand, within hsdMat 1784.373 kb on + strand, within hsdMat 1784.400 kb on + strand, within hsdMat 1784.479 kb on + strand, within hsdMat 1784.558 kb on - strand, within hsdMat 1784.692 kb on - strand, within hsdMat 1784.744 kb on + strand, within hsdMat 1784.753 kb on + strand, within hsdMat 1784.921 kb on - strand, within hsdMat 1784.935 kb on + strand, within hsdMat 1785.102 kb on - strand, within hsdMat 1785.160 kb on - strand, within hsdMat 1785.190 kb on + strand, within hsdMat 1785.198 kb on - strand, within hsdMat 1785.200 kb on + strand, within hsdMat 1785.266 kb on - strand, within hsdMat 1785.380 kb on + strandat 1785.456 kb on - strandat 1785.469 kb on - strandat 1785.738 kb on + strand, within DVU1710at 1785.810 kb on + strand, within DVU1710at 1785.916 kb on + strand, within DVU1710at 1785.998 kb on - strand, within DVU1710at 1786.004 kb on + strand, within DVU1710at 1786.014 kb on + strand, within DVU1710at 1786.022 kb on - strand, within DVU1710at 1786.022 kb on - strand, within DVU1710at 1786.022 kb on - strand, within DVU1710at 1786.047 kb on - strandat 1786.064 kb on + strandat 1786.065 kb on + strandat 1786.084 kb on - strandat 1786.222 kb on + strandat 1786.230 kb on - strandat 1786.245 kb on - strandat 1786.257 kb on + strandat 1786.419 kb on + strandat 1786.427 kb on - strandat 1786.467 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 1mM as (N)
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1,783,091 - DVU1708 0.12 -0.4
1,783,170 + DVU1708 0.20 -0.3
1,783,266 - DVU1708 0.29 -0.3
1,783,296 - DVU1708 0.32 -0.4
1,783,555 + DVU1708 0.57 +0.1
1,783,665 + DVU1708 0.68 +0.2
1,784,088 - +1.0
1,784,218 + hsdM DVU1709 0.15 -0.4
1,784,236 - hsdM DVU1709 0.16 -0.6
1,784,373 + hsdM DVU1709 0.25 +0.2
1,784,400 + hsdM DVU1709 0.27 -0.2
1,784,479 + hsdM DVU1709 0.32 -0.2
1,784,558 - hsdM DVU1709 0.37 -1.7
1,784,692 - hsdM DVU1709 0.46 -0.4
1,784,744 + hsdM DVU1709 0.50 -0.1
1,784,753 + hsdM DVU1709 0.50 -0.4
1,784,921 - hsdM DVU1709 0.61 -1.1
1,784,935 + hsdM DVU1709 0.62 -0.3
1,785,102 - hsdM DVU1709 0.73 -0.7
1,785,160 - hsdM DVU1709 0.77 -2.8
1,785,190 + hsdM DVU1709 0.79 -0.5
1,785,198 - hsdM DVU1709 0.80 -0.8
1,785,200 + hsdM DVU1709 0.80 -1.2
1,785,266 - hsdM DVU1709 0.84 -1.8
1,785,380 + -1.9
1,785,456 - -0.6
1,785,469 - -0.4
1,785,738 + DVU1710 0.37 -0.7
1,785,810 + DVU1710 0.50 +0.1
1,785,916 + DVU1710 0.68 +0.1
1,785,998 - DVU1710 0.82 +0.2
1,786,004 + DVU1710 0.83 -1.4
1,786,014 + DVU1710 0.85 +0.2
1,786,022 - DVU1710 0.87 +0.8
1,786,022 - DVU1710 0.87 -0.5
1,786,022 - DVU1710 0.87 -0.3
1,786,047 - +1.2
1,786,064 + -0.4
1,786,065 + -0.4
1,786,084 - -0.5
1,786,222 + +0.7
1,786,230 - -0.6
1,786,245 - -0.5
1,786,257 + +0.7
1,786,419 + +0.2
1,786,427 - -0.3
1,786,467 + -0.1

Or see this region's nucleotide sequence