Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DORF13424

Experiment: MoLS4 with L-Cysteine 1mM as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfusA-2 and DORF13417 overlap by 8 nucleotidesDORF13417 and DORF13424 overlap by 23 nucleotidesDORF13424 and DVU1801 are separated by 82 nucleotides DVU1799: fusA-2 - translation elongation factor G (TIGR), at 1,859,827 to 1,861,875 fusA-2 DORF13417: DORF13417 - SEED: FIG00603341: hypothetical protein, at 1,861,868 to 1,862,878 DORF13417 DORF13424: DORF13424 - no description, at 1,862,856 to 1,862,999 DORF13424 DVU1801: DVU1801 - hypothetical protein (TIGR), at 1,863,082 to 1,864,269 DVU1801 Position (kb) 1862 1863Strain fitness (log2 ratio) -1 0 1 2at 1861.925 kb on - strandat 1862.909 kb on + strand, within DORF13424at 1863.070 kb on - strandat 1863.238 kb on - strand, within DVU1801at 1863.407 kb on - strand, within DVU1801at 1863.449 kb on + strand, within DVU1801at 1863.449 kb on + strand, within DVU1801at 1863.449 kb on + strand, within DVU1801at 1863.459 kb on + strand, within DVU1801at 1863.467 kb on - strand, within DVU1801at 1863.526 kb on - strand, within DVU1801at 1863.535 kb on - strand, within DVU1801at 1863.564 kb on + strand, within DVU1801at 1863.672 kb on - strand, within DVU1801at 1863.863 kb on - strand, within DVU1801at 1863.873 kb on + strand, within DVU1801at 1863.880 kb on + strand, within DVU1801at 1863.904 kb on - strand, within DVU1801at 1863.976 kb on + strand, within DVU1801

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 1mM as (N)
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1,861,925 - -0.4
1,862,909 + DORF13424 0.37 -1.2
1,863,070 - +0.1
1,863,238 - DVU1801 0.13 +0.2
1,863,407 - DVU1801 0.27 +0.1
1,863,449 + DVU1801 0.31 +0.5
1,863,449 + DVU1801 0.31 +0.3
1,863,449 + DVU1801 0.31 -0.2
1,863,459 + DVU1801 0.32 +2.2
1,863,467 - DVU1801 0.32 +0.8
1,863,526 - DVU1801 0.37 -0.0
1,863,535 - DVU1801 0.38 +0.4
1,863,564 + DVU1801 0.41 +0.2
1,863,672 - DVU1801 0.50 +0.2
1,863,863 - DVU1801 0.66 +0.2
1,863,873 + DVU1801 0.67 +0.0
1,863,880 + DVU1801 0.67 -0.1
1,863,904 - DVU1801 0.69 -0.3
1,863,976 + DVU1801 0.75 -0.3

Or see this region's nucleotide sequence