Experiment: Lactate-Sulfate (60-50mM) with 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1516 and DVU1517 overlap by 4 nucleotides DVU1517 and DVU1518 are separated by 210 nucleotides DVU1518 and DVU1519 are separated by 56 nucleotides DVU1519 and DVU1520 are separated by 57 nucleotides
DVU1516: DVU1516 - hypothetical protein (TIGR), at 1,587,127 to 1,587,486
DVU1516
DVU1517: DVU1517 - transcriptional regulator cII, putative (TIGR), at 1,587,483 to 1,587,896
DVU1517
DVU1518: DVU1518 - transcriptional regulator cI, truncation (TIGR), at 1,588,107 to 1,588,397
DVU1518
DVU1519: DVU1519 - transcriptional regulator, putative (TIGR), at 1,588,454 to 1,589,107
DVU1519
DVU1520: DVU1520 - hypothetical protein (TIGR), at 1,589,165 to 1,590,151
DVU1520
Position (kb)
1588
1589 Strain fitness (log2 ratio)
-1
0
1
2 at 1587.276 kb on + strand, within DVU1516 at 1587.288 kb on + strand, within DVU1516 at 1587.346 kb on + strand, within DVU1516 at 1587.346 kb on + strand, within DVU1516 at 1587.354 kb on - strand, within DVU1516 at 1587.426 kb on + strand, within DVU1516 at 1587.478 kb on + strand at 1587.557 kb on + strand, within DVU1517 at 1587.558 kb on - strand, within DVU1517 at 1587.565 kb on - strand, within DVU1517 at 1587.565 kb on - strand, within DVU1517 at 1587.570 kb on - strand, within DVU1517 at 1587.570 kb on - strand, within DVU1517 at 1587.570 kb on - strand, within DVU1517 at 1587.707 kb on - strand, within DVU1517 at 1587.708 kb on - strand, within DVU1517 at 1587.780 kb on + strand, within DVU1517 at 1587.805 kb on + strand, within DVU1517 at 1587.908 kb on + strand at 1587.944 kb on + strand at 1587.944 kb on + strand at 1587.958 kb on + strand at 1588.050 kb on - strand at 1588.105 kb on + strand at 1588.113 kb on - strand at 1588.166 kb on + strand, within DVU1518 at 1588.195 kb on - strand, within DVU1518 at 1588.210 kb on - strand, within DVU1518 at 1589.311 kb on + strand, within DVU1520
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-Sulfate (60-50mM) with 0.1% Yeast Extract remove 1,587,276 + DVU1516 0.41 -0.4 1,587,288 + DVU1516 0.45 -0.2 1,587,346 + DVU1516 0.61 -1.1 1,587,346 + DVU1516 0.61 -0.2 1,587,354 - DVU1516 0.63 -0.2 1,587,426 + DVU1516 0.83 -0.4 1,587,478 + -0.3 1,587,557 + DVU1517 0.18 -0.2 1,587,558 - DVU1517 0.18 -0.3 1,587,565 - DVU1517 0.20 +0.3 1,587,565 - DVU1517 0.20 -0.7 1,587,570 - DVU1517 0.21 -0.5 1,587,570 - DVU1517 0.21 -0.3 1,587,570 - DVU1517 0.21 -0.3 1,587,707 - DVU1517 0.54 -0.1 1,587,708 - DVU1517 0.54 -0.3 1,587,780 + DVU1517 0.72 -0.3 1,587,805 + DVU1517 0.78 -0.1 1,587,908 + -0.1 1,587,944 + -0.4 1,587,944 + -0.1 1,587,958 + -0.3 1,588,050 - -0.3 1,588,105 + +1.8 1,588,113 - -0.6 1,588,166 + DVU1518 0.20 -0.5 1,588,195 - DVU1518 0.30 +0.0 1,588,210 - DVU1518 0.35 -0.7 1,589,311 + DVU1520 0.15 +0.3
Or see this region's nucleotide sequence