Experiment: Lactate; aerobic; with copper, sample2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0427 and Psest_0428 are separated by 753 nucleotides Psest_0428 and Psest_0429 overlap by 4 nucleotides Psest_0429 and Psest_0430 are separated by 8 nucleotides
Psest_0427: Psest_0427 - Transposase and inactivated derivatives, at 465,266 to 465,544
_0427
Psest_0428: Psest_0428 - phosphonate ABC transporter, ATP-binding protein, at 466,298 to 467,125
_0428
Psest_0429: Psest_0429 - phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein, at 467,122 to 467,985
_0429
Psest_0430: Psest_0430 - phosphonate ABC transporter, permease protein PhnE, at 467,994 to 468,821
_0430
Position (kb) 466
467
468 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 465.586 kb on + strand at 465.707 kb on - strand at 465.707 kb on - strand at 465.934 kb on + strand at 465.935 kb on - strand at 465.935 kb on - strand at 465.935 kb on - strand at 465.935 kb on - strand at 465.935 kb on - strand at 465.970 kb on + strand at 465.970 kb on + strand at 465.971 kb on - strand at 465.978 kb on + strand at 465.978 kb on + strand at 465.978 kb on + strand at 465.979 kb on - strand at 465.979 kb on - strand at 465.979 kb on - strand at 465.979 kb on - strand at 466.000 kb on + strand at 466.000 kb on + strand at 466.000 kb on + strand at 466.000 kb on + strand at 466.000 kb on + strand at 466.000 kb on + strand at 466.000 kb on + strand at 466.001 kb on - strand at 466.001 kb on - strand at 466.001 kb on - strand at 466.001 kb on - strand at 466.001 kb on - strand at 466.001 kb on - strand at 466.012 kb on + strand at 466.012 kb on + strand at 466.012 kb on + strand at 466.013 kb on - strand at 466.013 kb on - strand at 466.013 kb on - strand at 466.013 kb on - strand at 466.013 kb on - strand at 466.013 kb on - strand at 466.014 kb on + strand at 466.014 kb on + strand at 466.015 kb on - strand at 466.015 kb on - strand at 466.051 kb on + strand at 466.051 kb on + strand at 466.051 kb on + strand at 466.051 kb on + strand at 466.052 kb on - strand at 466.069 kb on + strand at 466.074 kb on + strand at 466.075 kb on - strand at 466.091 kb on + strand at 466.092 kb on - strand at 466.133 kb on - strand at 466.190 kb on + strand at 466.190 kb on + strand at 466.190 kb on + strand at 466.190 kb on + strand at 466.191 kb on - strand at 466.191 kb on - strand at 466.191 kb on - strand at 466.191 kb on - strand at 466.191 kb on - strand at 466.378 kb on - strand at 466.587 kb on + strand, within Psest_0428 at 466.587 kb on + strand, within Psest_0428 at 466.937 kb on + strand, within Psest_0428 at 467.039 kb on + strand, within Psest_0428 at 467.039 kb on + strand, within Psest_0428 at 467.039 kb on + strand, within Psest_0428 at 467.039 kb on + strand, within Psest_0428 at 467.039 kb on + strand, within Psest_0428 at 467.039 kb on + strand, within Psest_0428 at 467.039 kb on + strand, within Psest_0428 at 467.039 kb on + strand, within Psest_0428 at 467.039 kb on + strand, within Psest_0428 at 467.040 kb on - strand, within Psest_0428 at 467.040 kb on - strand, within Psest_0428 at 467.040 kb on - strand, within Psest_0428 at 467.040 kb on - strand, within Psest_0428 at 467.040 kb on - strand, within Psest_0428 at 467.040 kb on - strand, within Psest_0428 at 467.040 kb on - strand, within Psest_0428 at 467.040 kb on - strand, within Psest_0428 at 467.040 kb on - strand, within Psest_0428 at 467.040 kb on - strand, within Psest_0428 at 467.054 kb on - strand at 467.133 kb on - strand at 467.144 kb on + strand at 467.144 kb on + strand at 467.144 kb on + strand at 467.145 kb on - strand at 467.213 kb on + strand, within Psest_0429 at 467.214 kb on - strand, within Psest_0429 at 467.282 kb on - strand, within Psest_0429 at 467.332 kb on + strand, within Psest_0429 at 467.368 kb on - strand, within Psest_0429 at 467.380 kb on + strand, within Psest_0429 at 467.380 kb on + strand, within Psest_0429 at 467.381 kb on - strand, within Psest_0429 at 467.398 kb on + strand, within Psest_0429 at 467.399 kb on - strand, within Psest_0429 at 467.399 kb on - strand, within Psest_0429 at 467.399 kb on - strand, within Psest_0429 at 467.399 kb on - strand, within Psest_0429 at 467.467 kb on + strand, within Psest_0429 at 467.467 kb on + strand, within Psest_0429 at 467.467 kb on + strand, within Psest_0429 at 467.468 kb on - strand, within Psest_0429 at 467.512 kb on + strand, within Psest_0429 at 467.523 kb on + strand, within Psest_0429 at 467.524 kb on - strand, within Psest_0429 at 467.542 kb on + strand, within Psest_0429 at 467.542 kb on + strand, within Psest_0429 at 467.543 kb on - strand, within Psest_0429 at 467.627 kb on - strand, within Psest_0429 at 467.712 kb on - strand, within Psest_0429 at 467.712 kb on - strand, within Psest_0429 at 467.712 kb on - strand, within Psest_0429 at 467.712 kb on - strand, within Psest_0429 at 467.765 kb on + strand, within Psest_0429 at 467.765 kb on + strand, within Psest_0429 at 467.766 kb on - strand, within Psest_0429 at 467.766 kb on - strand, within Psest_0429 at 467.766 kb on - strand, within Psest_0429 at 467.766 kb on - strand, within Psest_0429 at 467.766 kb on - strand, within Psest_0429 at 467.766 kb on - strand, within Psest_0429 at 467.766 kb on - strand, within Psest_0429 at 467.766 kb on - strand, within Psest_0429 at 467.766 kb on - strand, within Psest_0429 at 467.852 kb on + strand, within Psest_0429 at 467.852 kb on + strand, within Psest_0429 at 467.852 kb on + strand, within Psest_0429 at 467.852 kb on + strand, within Psest_0429 at 467.852 kb on + strand, within Psest_0429 at 467.852 kb on + strand, within Psest_0429 at 467.853 kb on - strand, within Psest_0429 at 467.853 kb on - strand, within Psest_0429 at 467.853 kb on - strand, within Psest_0429 at 467.853 kb on - strand, within Psest_0429 at 467.853 kb on - strand, within Psest_0429 at 467.853 kb on - strand, within Psest_0429 at 467.993 kb on + strand at 468.007 kb on - strand at 468.100 kb on + strand, within Psest_0430 at 468.100 kb on + strand, within Psest_0430 at 468.101 kb on - strand, within Psest_0430 at 468.101 kb on - strand, within Psest_0430 at 468.101 kb on - strand, within Psest_0430
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate; aerobic; with copper, sample2 remove 465,586 + +0.5 465,707 - -0.4 465,707 - -0.3 465,934 + -1.5 465,935 - -0.1 465,935 - -2.2 465,935 - -0.3 465,935 - -0.6 465,935 - +0.5 465,970 + -0.7 465,970 + -1.7 465,971 - -0.2 465,978 + +1.1 465,978 + +0.6 465,978 + -0.5 465,979 - -0.2 465,979 - -0.3 465,979 - -0.9 465,979 - +0.8 466,000 + -0.3 466,000 + +1.5 466,000 + +0.9 466,000 + +0.5 466,000 + +0.5 466,000 + +0.7 466,000 + -1.5 466,001 - -0.9 466,001 - -0.1 466,001 - -1.5 466,001 - -1.8 466,001 - -0.5 466,001 - +0.9 466,012 + -2.2 466,012 + -0.0 466,012 + -0.1 466,013 - -1.1 466,013 - +0.9 466,013 - +0.5 466,013 - -0.3 466,013 - -2.0 466,013 - -0.6 466,014 + +0.5 466,014 + -0.6 466,015 - +0.5 466,015 - +0.1 466,051 + -1.3 466,051 + +0.0 466,051 + +1.5 466,051 + +0.7 466,052 - +0.2 466,069 + -0.3 466,074 + -1.1 466,075 - -0.7 466,091 + -3.1 466,092 - +0.0 466,133 - -0.7 466,190 + +0.0 466,190 + -0.5 466,190 + -1.6 466,190 + +1.5 466,191 - -0.6 466,191 - -0.1 466,191 - -0.3 466,191 - -0.8 466,191 - -0.7 466,378 - -0.0 466,587 + Psest_0428 0.35 -0.3 466,587 + Psest_0428 0.35 +0.5 466,937 + Psest_0428 0.77 -2.3 467,039 + Psest_0428 0.89 -1.2 467,039 + Psest_0428 0.89 +0.5 467,039 + Psest_0428 0.89 -2.1 467,039 + Psest_0428 0.89 -1.1 467,039 + Psest_0428 0.89 +1.8 467,039 + Psest_0428 0.89 -0.7 467,039 + Psest_0428 0.89 -0.8 467,039 + Psest_0428 0.89 +0.8 467,039 + Psest_0428 0.89 +0.5 467,040 - Psest_0428 0.90 -0.3 467,040 - Psest_0428 0.90 -0.5 467,040 - Psest_0428 0.90 -0.1 467,040 - Psest_0428 0.90 -0.8 467,040 - Psest_0428 0.90 -0.0 467,040 - Psest_0428 0.90 -0.7 467,040 - Psest_0428 0.90 +0.2 467,040 - Psest_0428 0.90 -0.1 467,040 - Psest_0428 0.90 -0.1 467,040 - Psest_0428 0.90 -0.5 467,054 - -0.8 467,133 - -0.6 467,144 + +0.2 467,144 + +0.1 467,144 + -0.9 467,145 - -1.1 467,213 + Psest_0429 0.11 +0.6 467,214 - Psest_0429 0.11 +0.5 467,282 - Psest_0429 0.19 -1.3 467,332 + Psest_0429 0.24 +0.4 467,368 - Psest_0429 0.28 -2.1 467,380 + Psest_0429 0.30 -1.5 467,380 + Psest_0429 0.30 -0.3 467,381 - Psest_0429 0.30 -0.1 467,398 + Psest_0429 0.32 -1.2 467,399 - Psest_0429 0.32 -0.8 467,399 - Psest_0429 0.32 -0.3 467,399 - Psest_0429 0.32 -0.3 467,399 - Psest_0429 0.32 -0.7 467,467 + Psest_0429 0.40 -1.3 467,467 + Psest_0429 0.40 -1.3 467,467 + Psest_0429 0.40 -1.1 467,468 - Psest_0429 0.40 +1.4 467,512 + Psest_0429 0.45 -0.7 467,523 + Psest_0429 0.46 -2.8 467,524 - Psest_0429 0.47 +0.5 467,542 + Psest_0429 0.49 -0.3 467,542 + Psest_0429 0.49 -0.2 467,543 - Psest_0429 0.49 -3.0 467,627 - Psest_0429 0.58 -0.3 467,712 - Psest_0429 0.68 +2.0 467,712 - Psest_0429 0.68 -1.2 467,712 - Psest_0429 0.68 +0.0 467,712 - Psest_0429 0.68 -1.2 467,765 + Psest_0429 0.74 +0.8 467,765 + Psest_0429 0.74 -0.9 467,766 - Psest_0429 0.75 +0.4 467,766 - Psest_0429 0.75 -0.2 467,766 - Psest_0429 0.75 -0.3 467,766 - Psest_0429 0.75 -0.7 467,766 - Psest_0429 0.75 -1.3 467,766 - Psest_0429 0.75 -0.6 467,766 - Psest_0429 0.75 -0.1 467,766 - Psest_0429 0.75 -1.0 467,766 - Psest_0429 0.75 -0.3 467,852 + Psest_0429 0.84 -1.8 467,852 + Psest_0429 0.84 -0.1 467,852 + Psest_0429 0.84 +1.2 467,852 + Psest_0429 0.84 +0.4 467,852 + Psest_0429 0.84 -0.2 467,852 + Psest_0429 0.84 +0.5 467,853 - Psest_0429 0.85 +0.5 467,853 - Psest_0429 0.85 -0.1 467,853 - Psest_0429 0.85 +0.4 467,853 - Psest_0429 0.85 +0.2 467,853 - Psest_0429 0.85 -2.1 467,853 - Psest_0429 0.85 -0.4 467,993 + +1.3 468,007 - +0.1 468,100 + Psest_0430 0.13 -0.3 468,100 + Psest_0430 0.13 -0.4 468,101 - Psest_0430 0.13 -0.3 468,101 - Psest_0430 0.13 -0.3 468,101 - Psest_0430 0.13 +0.8
Or see this region's nucleotide sequence