Experiment: Lactate; aerobic; with copper, sample1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0908 and Psest_0909 overlap by 1 nucleotides Psest_0909 and Psest_0910 are separated by 51 nucleotides Psest_0910 and Psest_0911 are separated by 94 nucleotides Psest_0911 and Psest_0912 are separated by 208 nucleotides
Psest_0908: Psest_0908 - hypothetical protein, at 986,202 to 986,606
_0908
Psest_0909: Psest_0909 - hypothetical protein, at 986,606 to 986,920
_0909
Psest_0910: Psest_0910 - hypothetical protein, at 986,972 to 987,343
_0910
Psest_0911: Psest_0911 - Inhibitor of the KinA pathway to sporulation, predicted exonuclease, at 987,438 to 988,091
_0911
Psest_0912: Psest_0912 - Tellurite resistance protein TerB., at 988,300 to 990,783
_0912
Position (kb) 986
987
988 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 985.978 kb on - strand at 986.017 kb on - strand at 986.021 kb on - strand at 986.082 kb on - strand at 986.122 kb on + strand at 986.129 kb on + strand at 986.130 kb on - strand at 986.179 kb on + strand at 986.179 kb on + strand at 986.180 kb on - strand at 986.190 kb on + strand at 986.221 kb on + strand at 986.226 kb on + strand at 986.226 kb on + strand at 986.227 kb on - strand at 986.424 kb on + strand, within Psest_0908 at 986.424 kb on + strand, within Psest_0908 at 986.424 kb on + strand, within Psest_0908 at 986.424 kb on + strand, within Psest_0908 at 986.424 kb on + strand, within Psest_0908 at 986.425 kb on - strand, within Psest_0908 at 986.442 kb on + strand, within Psest_0908 at 986.442 kb on + strand, within Psest_0908 at 986.442 kb on + strand, within Psest_0908 at 986.443 kb on - strand, within Psest_0908 at 986.484 kb on - strand, within Psest_0908 at 986.484 kb on - strand, within Psest_0908 at 986.484 kb on - strand, within Psest_0908 at 986.534 kb on + strand, within Psest_0908 at 986.534 kb on + strand, within Psest_0908 at 986.534 kb on + strand, within Psest_0908 at 986.541 kb on + strand, within Psest_0908 at 986.542 kb on - strand, within Psest_0908 at 986.542 kb on - strand, within Psest_0908 at 986.542 kb on - strand, within Psest_0908 at 986.585 kb on + strand at 986.586 kb on - strand at 986.620 kb on - strand at 986.637 kb on + strand at 986.637 kb on + strand at 986.637 kb on + strand at 986.680 kb on + strand, within Psest_0909 at 986.681 kb on - strand, within Psest_0909 at 986.681 kb on - strand, within Psest_0909 at 986.814 kb on - strand, within Psest_0909 at 986.835 kb on + strand, within Psest_0909 at 986.835 kb on + strand, within Psest_0909 at 986.835 kb on + strand, within Psest_0909 at 986.835 kb on + strand, within Psest_0909 at 986.835 kb on + strand, within Psest_0909 at 986.836 kb on - strand, within Psest_0909 at 986.836 kb on - strand, within Psest_0909 at 986.836 kb on - strand, within Psest_0909 at 986.836 kb on - strand, within Psest_0909 at 986.836 kb on - strand, within Psest_0909 at 986.836 kb on - strand, within Psest_0909 at 986.836 kb on - strand, within Psest_0909 at 986.873 kb on + strand, within Psest_0909 at 986.873 kb on + strand, within Psest_0909 at 986.873 kb on + strand, within Psest_0909 at 986.874 kb on - strand, within Psest_0909 at 986.888 kb on - strand, within Psest_0909 at 986.904 kb on - strand at 987.012 kb on + strand, within Psest_0910 at 987.013 kb on - strand, within Psest_0910 at 987.013 kb on - strand, within Psest_0910 at 987.041 kb on - strand, within Psest_0910 at 987.083 kb on + strand, within Psest_0910 at 987.140 kb on + strand, within Psest_0910 at 987.140 kb on + strand, within Psest_0910 at 987.140 kb on + strand, within Psest_0910 at 987.141 kb on - strand, within Psest_0910 at 987.141 kb on - strand, within Psest_0910 at 987.183 kb on + strand, within Psest_0910 at 987.183 kb on + strand, within Psest_0910 at 987.184 kb on - strand, within Psest_0910 at 987.184 kb on - strand, within Psest_0910 at 987.242 kb on + strand, within Psest_0910 at 987.242 kb on + strand, within Psest_0910 at 987.242 kb on + strand, within Psest_0910 at 987.242 kb on + strand, within Psest_0910 at 987.242 kb on + strand, within Psest_0910 at 987.242 kb on + strand, within Psest_0910 at 987.242 kb on + strand, within Psest_0910 at 987.242 kb on + strand, within Psest_0910 at 987.243 kb on - strand, within Psest_0910 at 987.243 kb on - strand, within Psest_0910 at 987.243 kb on - strand, within Psest_0910 at 987.243 kb on - strand, within Psest_0910 at 987.243 kb on - strand, within Psest_0910 at 987.315 kb on + strand at 987.362 kb on - strand at 987.362 kb on - strand at 987.364 kb on + strand at 987.364 kb on + strand at 987.365 kb on - strand at 987.367 kb on - strand at 987.405 kb on + strand at 987.406 kb on - strand at 987.406 kb on - strand at 987.406 kb on - strand at 987.445 kb on + strand at 987.503 kb on - strand at 987.537 kb on + strand, within Psest_0911 at 987.577 kb on + strand, within Psest_0911 at 987.577 kb on + strand, within Psest_0911 at 987.577 kb on + strand, within Psest_0911 at 987.577 kb on + strand, within Psest_0911 at 987.578 kb on - strand, within Psest_0911 at 987.578 kb on - strand, within Psest_0911 at 987.703 kb on + strand, within Psest_0911 at 987.733 kb on + strand, within Psest_0911 at 987.733 kb on + strand, within Psest_0911 at 987.733 kb on + strand, within Psest_0911 at 987.734 kb on - strand, within Psest_0911 at 987.734 kb on - strand, within Psest_0911 at 987.775 kb on + strand, within Psest_0911 at 987.776 kb on - strand, within Psest_0911 at 987.776 kb on - strand, within Psest_0911 at 987.776 kb on - strand, within Psest_0911 at 987.776 kb on - strand, within Psest_0911 at 987.776 kb on - strand, within Psest_0911 at 987.812 kb on + strand, within Psest_0911 at 987.813 kb on - strand, within Psest_0911 at 987.847 kb on - strand, within Psest_0911 at 987.889 kb on + strand, within Psest_0911 at 987.889 kb on + strand, within Psest_0911 at 987.890 kb on - strand, within Psest_0911 at 987.895 kb on + strand, within Psest_0911 at 987.895 kb on + strand, within Psest_0911 at 987.895 kb on + strand, within Psest_0911 at 987.895 kb on + strand, within Psest_0911 at 987.895 kb on + strand, within Psest_0911 at 987.895 kb on + strand, within Psest_0911 at 987.896 kb on - strand, within Psest_0911 at 987.896 kb on - strand, within Psest_0911 at 987.896 kb on - strand, within Psest_0911 at 987.896 kb on - strand, within Psest_0911 at 987.896 kb on - strand, within Psest_0911 at 987.896 kb on - strand, within Psest_0911 at 987.896 kb on - strand, within Psest_0911 at 987.896 kb on - strand, within Psest_0911 at 987.896 kb on - strand, within Psest_0911 at 987.896 kb on - strand, within Psest_0911 at 987.896 kb on - strand, within Psest_0911 at 987.896 kb on - strand, within Psest_0911 at 987.896 kb on - strand, within Psest_0911 at 987.896 kb on - strand, within Psest_0911 at 987.896 kb on - strand, within Psest_0911 at 987.896 kb on - strand, within Psest_0911 at 987.917 kb on + strand, within Psest_0911 at 987.925 kb on + strand, within Psest_0911 at 987.925 kb on + strand, within Psest_0911 at 987.925 kb on + strand, within Psest_0911 at 987.926 kb on - strand, within Psest_0911 at 987.926 kb on - strand, within Psest_0911 at 987.926 kb on - strand, within Psest_0911 at 987.991 kb on + strand, within Psest_0911 at 987.991 kb on + strand, within Psest_0911 at 987.992 kb on - strand, within Psest_0911 at 987.992 kb on - strand, within Psest_0911 at 988.064 kb on - strand at 988.089 kb on + strand at 988.090 kb on - strand at 988.092 kb on + strand at 988.200 kb on - strand at 988.200 kb on - strand at 988.216 kb on + strand at 988.216 kb on + strand at 988.216 kb on + strand at 988.216 kb on + strand at 988.216 kb on + strand at 988.216 kb on + strand at 988.216 kb on + strand at 988.216 kb on + strand at 988.216 kb on + strand at 988.216 kb on + strand at 988.216 kb on + strand at 988.216 kb on + strand at 988.216 kb on + strand at 988.216 kb on + strand at 988.216 kb on + strand at 988.216 kb on + strand at 988.216 kb on + strand at 988.217 kb on - strand at 988.217 kb on - strand at 988.217 kb on - strand at 988.217 kb on - strand at 988.217 kb on - strand at 988.217 kb on - strand at 988.217 kb on - strand at 988.217 kb on - strand at 988.231 kb on + strand at 988.232 kb on - strand at 988.232 kb on - strand at 988.283 kb on + strand at 988.283 kb on + strand at 988.283 kb on + strand at 988.283 kb on + strand at 988.284 kb on - strand at 988.284 kb on - strand at 988.284 kb on - strand at 988.284 kb on - strand at 988.284 kb on - strand at 988.284 kb on - strand at 988.286 kb on - strand at 988.314 kb on + strand at 988.338 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate; aerobic; with copper, sample1 remove 985,978 - +0.1 986,017 - +0.1 986,021 - +2.3 986,082 - -1.4 986,122 + -1.0 986,129 + -1.3 986,130 - +0.8 986,179 + +0.1 986,179 + -0.3 986,180 - +0.1 986,190 + -0.9 986,221 + -0.2 986,226 + +1.1 986,226 + +1.0 986,227 - -0.2 986,424 + Psest_0908 0.55 +1.5 986,424 + Psest_0908 0.55 -2.7 986,424 + Psest_0908 0.55 +1.5 986,424 + Psest_0908 0.55 -1.1 986,424 + Psest_0908 0.55 -0.4 986,425 - Psest_0908 0.55 +0.3 986,442 + Psest_0908 0.59 +0.7 986,442 + Psest_0908 0.59 +0.7 986,442 + Psest_0908 0.59 -0.9 986,443 - Psest_0908 0.60 -0.0 986,484 - Psest_0908 0.70 +0.0 986,484 - Psest_0908 0.70 -0.1 986,484 - Psest_0908 0.70 -1.4 986,534 + Psest_0908 0.82 +0.7 986,534 + Psest_0908 0.82 +1.0 986,534 + Psest_0908 0.82 +0.6 986,541 + Psest_0908 0.84 -0.7 986,542 - Psest_0908 0.84 -0.1 986,542 - Psest_0908 0.84 +1.2 986,542 - Psest_0908 0.84 -0.2 986,585 + +0.6 986,586 - -0.6 986,620 - -3.0 986,637 + -1.0 986,637 + -0.9 986,637 + -0.4 986,680 + Psest_0909 0.23 -2.2 986,681 - Psest_0909 0.24 +1.9 986,681 - Psest_0909 0.24 +0.6 986,814 - Psest_0909 0.66 +0.3 986,835 + Psest_0909 0.73 +0.1 986,835 + Psest_0909 0.73 -0.7 986,835 + Psest_0909 0.73 +1.1 986,835 + Psest_0909 0.73 +1.5 986,835 + Psest_0909 0.73 -0.8 986,836 - Psest_0909 0.73 -1.4 986,836 - Psest_0909 0.73 +0.6 986,836 - Psest_0909 0.73 -2.0 986,836 - Psest_0909 0.73 -1.0 986,836 - Psest_0909 0.73 +2.7 986,836 - Psest_0909 0.73 -0.9 986,836 - Psest_0909 0.73 -0.5 986,873 + Psest_0909 0.85 +0.1 986,873 + Psest_0909 0.85 +1.6 986,873 + Psest_0909 0.85 +2.1 986,874 - Psest_0909 0.85 +1.1 986,888 - Psest_0909 0.90 -1.7 986,904 - -0.5 987,012 + Psest_0910 0.11 +1.9 987,013 - Psest_0910 0.11 -0.6 987,013 - Psest_0910 0.11 -0.2 987,041 - Psest_0910 0.19 -0.9 987,083 + Psest_0910 0.30 -0.5 987,140 + Psest_0910 0.45 -1.4 987,140 + Psest_0910 0.45 -0.9 987,140 + Psest_0910 0.45 +1.5 987,141 - Psest_0910 0.45 -1.2 987,141 - Psest_0910 0.45 -0.7 987,183 + Psest_0910 0.57 -1.3 987,183 + Psest_0910 0.57 +0.9 987,184 - Psest_0910 0.57 -2.0 987,184 - Psest_0910 0.57 -0.3 987,242 + Psest_0910 0.73 +0.3 987,242 + Psest_0910 0.73 -1.4 987,242 + Psest_0910 0.73 -0.3 987,242 + Psest_0910 0.73 -1.5 987,242 + Psest_0910 0.73 +0.1 987,242 + Psest_0910 0.73 -0.4 987,242 + Psest_0910 0.73 -0.7 987,242 + Psest_0910 0.73 -0.9 987,243 - Psest_0910 0.73 +0.5 987,243 - Psest_0910 0.73 +0.9 987,243 - Psest_0910 0.73 +0.0 987,243 - Psest_0910 0.73 -2.0 987,243 - Psest_0910 0.73 -0.1 987,315 + +0.7 987,362 - -2.1 987,362 - -0.6 987,364 + -1.1 987,364 + +0.5 987,365 - -0.1 987,367 - +0.1 987,405 + -0.1 987,406 - +0.1 987,406 - -0.9 987,406 - +0.6 987,445 + +0.1 987,503 - +2.5 987,537 + Psest_0911 0.15 +0.1 987,577 + Psest_0911 0.21 +0.1 987,577 + Psest_0911 0.21 +0.5 987,577 + Psest_0911 0.21 +0.3 987,577 + Psest_0911 0.21 -0.3 987,578 - Psest_0911 0.21 -0.7 987,578 - Psest_0911 0.21 +0.1 987,703 + Psest_0911 0.41 +0.5 987,733 + Psest_0911 0.45 -1.4 987,733 + Psest_0911 0.45 -1.0 987,733 + Psest_0911 0.45 +0.5 987,734 - Psest_0911 0.45 +1.1 987,734 - Psest_0911 0.45 -0.5 987,775 + Psest_0911 0.52 +0.1 987,776 - Psest_0911 0.52 -0.2 987,776 - Psest_0911 0.52 -2.0 987,776 - Psest_0911 0.52 +0.9 987,776 - Psest_0911 0.52 -0.9 987,776 - Psest_0911 0.52 -0.7 987,812 + Psest_0911 0.57 +0.6 987,813 - Psest_0911 0.57 +0.1 987,847 - Psest_0911 0.63 +2.5 987,889 + Psest_0911 0.69 +0.4 987,889 + Psest_0911 0.69 -1.1 987,890 - Psest_0911 0.69 -0.5 987,895 + Psest_0911 0.70 +1.7 987,895 + Psest_0911 0.70 +1.4 987,895 + Psest_0911 0.70 -1.0 987,895 + Psest_0911 0.70 +0.5 987,895 + Psest_0911 0.70 -0.6 987,895 + Psest_0911 0.70 -0.5 987,896 - Psest_0911 0.70 -0.9 987,896 - Psest_0911 0.70 +0.3 987,896 - Psest_0911 0.70 -0.4 987,896 - Psest_0911 0.70 +0.3 987,896 - Psest_0911 0.70 -0.5 987,896 - Psest_0911 0.70 -0.4 987,896 - Psest_0911 0.70 -0.6 987,896 - Psest_0911 0.70 +0.4 987,896 - Psest_0911 0.70 -1.7 987,896 - Psest_0911 0.70 -0.6 987,896 - Psest_0911 0.70 +1.5 987,896 - Psest_0911 0.70 -0.9 987,896 - Psest_0911 0.70 -0.1 987,896 - Psest_0911 0.70 +0.1 987,896 - Psest_0911 0.70 -1.6 987,896 - Psest_0911 0.70 -2.1 987,917 + Psest_0911 0.73 +0.9 987,925 + Psest_0911 0.74 +1.3 987,925 + Psest_0911 0.74 -0.6 987,925 + Psest_0911 0.74 +0.1 987,926 - Psest_0911 0.75 -0.1 987,926 - Psest_0911 0.75 -1.8 987,926 - Psest_0911 0.75 -1.9 987,991 + Psest_0911 0.85 +0.3 987,991 + Psest_0911 0.85 +0.5 987,992 - Psest_0911 0.85 -0.9 987,992 - Psest_0911 0.85 +0.3 988,064 - +0.5 988,089 + -0.3 988,090 - -0.6 988,092 + -1.0 988,200 - -0.1 988,200 - +1.6 988,216 + -3.4 988,216 + +0.3 988,216 + +0.3 988,216 + +1.1 988,216 + -1.3 988,216 + -0.7 988,216 + -0.3 988,216 + -0.4 988,216 + -0.1 988,216 + -1.2 988,216 + -0.6 988,216 + -0.2 988,216 + -0.1 988,216 + +0.5 988,216 + +1.7 988,216 + +0.4 988,216 + -0.4 988,217 - +0.5 988,217 - -0.3 988,217 - -0.6 988,217 - -1.6 988,217 - -0.5 988,217 - +0.0 988,217 - +1.1 988,217 - +0.4 988,231 + +1.3 988,232 - -0.3 988,232 - -0.7 988,283 + -0.2 988,283 + +0.3 988,283 + +0.4 988,283 + -0.6 988,284 - +1.1 988,284 - -1.3 988,284 - -0.5 988,284 - -1.2 988,284 - -1.9 988,284 - -0.5 988,286 - +1.1 988,314 + +0.9 988,338 - -1.2
Or see this region's nucleotide sequence