Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1882

Experiment: MoYLS4 with Molybdate 100uM and Tungstate 0.5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntphoH and DVU1882 are separated by 94 nucleotidesDVU1882 and DVU1883 overlap by 4 nucleotidesDVU1883 and DVU1884 are separated by 226 nucleotides DVU1881: phoH - phoH family protein (TIGR), at 1,949,567 to 1,950,583 phoH DVU1882: DVU1882 - HDIG domain protein (TIGR), at 1,950,678 to 1,953,038 DVU1882 DVU1883: DVU1883 - conserved hypothetical protein (TIGR), at 1,953,035 to 1,953,523 DVU1883 DVU1884: DVU1884 - methyl-accepting chemotaxis protein (TIGR), at 1,953,750 to 1,956,152 DVU1884 Position (kb) 1950 1951 1952 1953 1954Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1949.791 kb on + strand, within phoHat 1949.791 kb on + strand, within phoHat 1949.791 kb on + strand, within phoHat 1949.791 kb on + strand, within phoHat 1949.799 kb on - strand, within phoHat 1949.799 kb on - strand, within phoHat 1949.822 kb on + strand, within phoHat 1949.825 kb on - strand, within phoHat 1949.833 kb on + strand, within phoHat 1950.036 kb on + strand, within phoHat 1950.054 kb on - strand, within phoHat 1950.074 kb on + strand, within phoHat 1950.150 kb on - strand, within phoHat 1950.176 kb on - strand, within phoHat 1950.227 kb on - strand, within phoHat 1950.271 kb on + strand, within phoHat 1950.299 kb on + strand, within phoHat 1950.322 kb on + strand, within phoHat 1950.410 kb on - strand, within phoHat 1950.523 kb on + strandat 1950.635 kb on + strandat 1950.730 kb on - strandat 1950.916 kb on + strand, within DVU1882at 1950.916 kb on + strand, within DVU1882at 1951.051 kb on + strand, within DVU1882at 1951.076 kb on + strand, within DVU1882at 1951.076 kb on + strand, within DVU1882at 1951.084 kb on - strand, within DVU1882at 1951.114 kb on + strand, within DVU1882at 1951.147 kb on + strand, within DVU1882at 1951.168 kb on + strand, within DVU1882at 1951.334 kb on + strand, within DVU1882at 1951.342 kb on - strand, within DVU1882at 1951.377 kb on + strand, within DVU1882at 1951.654 kb on + strand, within DVU1882at 1951.714 kb on - strand, within DVU1882at 1951.739 kb on + strand, within DVU1882at 1951.807 kb on + strand, within DVU1882at 1951.907 kb on + strand, within DVU1882at 1951.942 kb on + strand, within DVU1882at 1951.952 kb on + strand, within DVU1882at 1951.992 kb on + strand, within DVU1882at 1952.067 kb on - strand, within DVU1882at 1952.091 kb on - strand, within DVU1882at 1952.185 kb on + strand, within DVU1882at 1952.219 kb on + strand, within DVU1882at 1952.291 kb on - strand, within DVU1882at 1952.464 kb on - strand, within DVU1882at 1952.552 kb on + strand, within DVU1882at 1952.579 kb on + strand, within DVU1882at 1952.579 kb on + strand, within DVU1882at 1952.597 kb on - strand, within DVU1882at 1952.832 kb on - strandat 1952.832 kb on - strandat 1952.838 kb on + strandat 1952.914 kb on - strandat 1952.914 kb on - strandat 1953.633 kb on + strandat 1953.638 kb on + strandat 1953.653 kb on + strandat 1953.653 kb on + strandat 1953.738 kb on + strandat 1953.970 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Molybdate 100uM and Tungstate 0.5mM
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1,949,791 + phoH DVU1881 0.22 -0.6
1,949,791 + phoH DVU1881 0.22 -0.2
1,949,791 + phoH DVU1881 0.22 -1.3
1,949,791 + phoH DVU1881 0.22 +0.6
1,949,799 - phoH DVU1881 0.23 -0.7
1,949,799 - phoH DVU1881 0.23 -0.2
1,949,822 + phoH DVU1881 0.25 +0.1
1,949,825 - phoH DVU1881 0.25 -0.1
1,949,833 + phoH DVU1881 0.26 -0.4
1,950,036 + phoH DVU1881 0.46 +0.7
1,950,054 - phoH DVU1881 0.48 -0.7
1,950,074 + phoH DVU1881 0.50 -0.1
1,950,150 - phoH DVU1881 0.57 -0.8
1,950,176 - phoH DVU1881 0.60 -0.4
1,950,227 - phoH DVU1881 0.65 +0.5
1,950,271 + phoH DVU1881 0.69 +0.1
1,950,299 + phoH DVU1881 0.72 -0.5
1,950,322 + phoH DVU1881 0.74 -0.8
1,950,410 - phoH DVU1881 0.83 +1.5
1,950,523 + +0.6
1,950,635 + -1.5
1,950,730 - -0.5
1,950,916 + DVU1882 0.10 -0.7
1,950,916 + DVU1882 0.10 +0.0
1,951,051 + DVU1882 0.16 -1.1
1,951,076 + DVU1882 0.17 -2.3
1,951,076 + DVU1882 0.17 -1.0
1,951,084 - DVU1882 0.17 -0.2
1,951,114 + DVU1882 0.18 -1.2
1,951,147 + DVU1882 0.20 -0.7
1,951,168 + DVU1882 0.21 -1.1
1,951,334 + DVU1882 0.28 +1.2
1,951,342 - DVU1882 0.28 -0.6
1,951,377 + DVU1882 0.30 -1.1
1,951,654 + DVU1882 0.41 -0.4
1,951,714 - DVU1882 0.44 -0.5
1,951,739 + DVU1882 0.45 -0.8
1,951,807 + DVU1882 0.48 -1.9
1,951,907 + DVU1882 0.52 -0.8
1,951,942 + DVU1882 0.54 -1.2
1,951,952 + DVU1882 0.54 +0.1
1,951,992 + DVU1882 0.56 +2.6
1,952,067 - DVU1882 0.59 -0.7
1,952,091 - DVU1882 0.60 -0.4
1,952,185 + DVU1882 0.64 +0.3
1,952,219 + DVU1882 0.65 -1.0
1,952,291 - DVU1882 0.68 -2.5
1,952,464 - DVU1882 0.76 -0.6
1,952,552 + DVU1882 0.79 -0.8
1,952,579 + DVU1882 0.81 -1.4
1,952,579 + DVU1882 0.81 +1.6
1,952,597 - DVU1882 0.81 -1.4
1,952,832 - +1.1
1,952,832 - -1.0
1,952,838 + -3.3
1,952,914 - -0.1
1,952,914 - +0.7
1,953,633 + +0.3
1,953,638 + +1.8
1,953,653 + +1.1
1,953,653 + +0.0
1,953,738 + +1.3
1,953,970 + -1.8

Or see this region's nucleotide sequence