Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0039

Experiment: Lactate; aerobic; sample2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0037 and Psest_0038 are separated by 79 nucleotidesPsest_0038 and Psest_0039 are separated by 16 nucleotidesPsest_0039 and Psest_0040 are separated by 248 nucleotidesPsest_0040 and Psest_0041 are separated by 184 nucleotides Psest_0037: Psest_0037 - trehalose synthase, Pseudomonas stutzeri type, at 38,805 to 40,874 _0037 Psest_0038: Psest_0038 - hypothetical protein, at 40,954 to 41,574 _0038 Psest_0039: Psest_0039 - phosphoglucomutase, alpha-D-glucose phosphate-specific, at 41,591 to 43,255 _0039 Psest_0040: Psest_0040 - Protein of unknown function (DUF2934)., at 43,504 to 43,701 _0040 Psest_0041: Psest_0041 - Uncharacterized protein conserved in bacteria, at 43,886 to 45,367 _0041 Position (kb) 41 42 43 44Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 40.906 kb on + strandat 40.908 kb on + strandat 40.908 kb on + strandat 40.909 kb on - strandat 40.909 kb on - strandat 40.983 kb on + strandat 40.984 kb on - strandat 40.984 kb on - strandat 41.122 kb on + strand, within Psest_0038at 41.122 kb on + strand, within Psest_0038at 41.123 kb on - strand, within Psest_0038at 41.440 kb on + strand, within Psest_0038at 41.440 kb on + strand, within Psest_0038at 41.440 kb on + strand, within Psest_0038at 41.440 kb on + strand, within Psest_0038at 41.441 kb on - strand, within Psest_0038at 41.441 kb on - strand, within Psest_0038at 41.441 kb on - strand, within Psest_0038at 41.441 kb on - strand, within Psest_0038at 41.476 kb on + strand, within Psest_0038at 41.477 kb on - strand, within Psest_0038at 41.478 kb on + strand, within Psest_0038at 41.478 kb on + strand, within Psest_0038at 41.478 kb on + strand, within Psest_0038at 41.478 kb on + strand, within Psest_0038at 41.479 kb on - strand, within Psest_0038at 41.479 kb on - strand, within Psest_0038at 41.479 kb on - strand, within Psest_0038at 41.479 kb on - strand, within Psest_0038at 41.479 kb on - strand, within Psest_0038at 41.479 kb on - strand, within Psest_0038at 41.479 kb on - strand, within Psest_0038at 41.676 kb on + strandat 41.685 kb on + strandat 41.685 kb on + strandat 41.685 kb on + strandat 41.686 kb on - strandat 41.686 kb on - strandat 41.932 kb on - strand, within Psest_0039at 42.237 kb on + strand, within Psest_0039at 42.237 kb on + strand, within Psest_0039at 42.237 kb on + strand, within Psest_0039at 42.238 kb on - strand, within Psest_0039at 42.258 kb on + strand, within Psest_0039at 42.258 kb on + strand, within Psest_0039at 42.505 kb on - strand, within Psest_0039at 42.600 kb on + strand, within Psest_0039at 42.600 kb on + strand, within Psest_0039at 42.600 kb on + strand, within Psest_0039at 42.600 kb on + strand, within Psest_0039at 42.600 kb on + strand, within Psest_0039at 42.600 kb on + strand, within Psest_0039at 42.600 kb on + strand, within Psest_0039at 42.600 kb on + strand, within Psest_0039at 42.600 kb on + strand, within Psest_0039at 42.600 kb on + strand, within Psest_0039at 42.600 kb on + strand, within Psest_0039at 42.601 kb on - strand, within Psest_0039at 42.601 kb on - strand, within Psest_0039at 42.601 kb on - strand, within Psest_0039at 42.601 kb on - strand, within Psest_0039at 42.601 kb on - strand, within Psest_0039at 42.762 kb on + strand, within Psest_0039at 42.762 kb on + strand, within Psest_0039at 42.762 kb on + strand, within Psest_0039at 42.762 kb on + strand, within Psest_0039at 42.762 kb on + strand, within Psest_0039at 42.762 kb on + strand, within Psest_0039at 42.762 kb on + strand, within Psest_0039at 42.763 kb on - strand, within Psest_0039at 42.763 kb on - strand, within Psest_0039at 42.763 kb on - strand, within Psest_0039at 42.763 kb on - strand, within Psest_0039at 42.763 kb on - strand, within Psest_0039at 42.763 kb on - strand, within Psest_0039at 42.846 kb on + strand, within Psest_0039at 42.846 kb on + strand, within Psest_0039at 42.846 kb on + strand, within Psest_0039at 42.847 kb on - strand, within Psest_0039at 42.847 kb on - strand, within Psest_0039at 42.847 kb on - strand, within Psest_0039at 43.176 kb on + strandat 43.176 kb on + strandat 43.176 kb on + strandat 43.177 kb on - strandat 43.177 kb on - strandat 43.177 kb on - strandat 43.177 kb on - strandat 43.177 kb on - strandat 43.177 kb on - strandat 43.337 kb on + strandat 43.338 kb on - strandat 43.347 kb on + strandat 43.347 kb on + strandat 43.348 kb on - strandat 43.537 kb on + strand, within Psest_0040at 43.538 kb on - strand, within Psest_0040at 43.621 kb on + strand, within Psest_0040at 43.621 kb on + strand, within Psest_0040at 43.621 kb on + strand, within Psest_0040at 43.621 kb on + strand, within Psest_0040at 43.621 kb on + strand, within Psest_0040at 43.621 kb on + strand, within Psest_0040at 43.621 kb on + strand, within Psest_0040at 43.621 kb on + strand, within Psest_0040at 43.621 kb on + strand, within Psest_0040at 43.622 kb on + strand, within Psest_0040at 43.622 kb on - strand, within Psest_0040at 43.622 kb on - strand, within Psest_0040at 43.622 kb on - strand, within Psest_0040at 43.622 kb on - strand, within Psest_0040at 43.622 kb on - strand, within Psest_0040at 43.622 kb on - strand, within Psest_0040at 43.622 kb on - strand, within Psest_0040at 43.699 kb on + strandat 43.818 kb on + strandat 43.818 kb on + strandat 43.819 kb on - strandat 43.819 kb on - strandat 43.914 kb on + strandat 43.915 kb on - strandat 43.946 kb on + strandat 43.947 kb on - strandat 44.093 kb on + strand, within Psest_0041

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate; aerobic; sample2
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40,906 + +0.0
40,908 + -0.7
40,908 + +0.2
40,909 - +0.3
40,909 - +0.0
40,983 + +1.0
40,984 - +1.0
40,984 - -0.2
41,122 + Psest_0038 0.27 +2.0
41,122 + Psest_0038 0.27 -0.1
41,123 - Psest_0038 0.27 -1.0
41,440 + Psest_0038 0.78 +1.1
41,440 + Psest_0038 0.78 +2.4
41,440 + Psest_0038 0.78 +0.5
41,440 + Psest_0038 0.78 +0.9
41,441 - Psest_0038 0.78 -0.6
41,441 - Psest_0038 0.78 +0.8
41,441 - Psest_0038 0.78 -0.0
41,441 - Psest_0038 0.78 -0.2
41,476 + Psest_0038 0.84 -0.7
41,477 - Psest_0038 0.84 +1.9
41,478 + Psest_0038 0.84 +0.5
41,478 + Psest_0038 0.84 +0.8
41,478 + Psest_0038 0.84 -0.5
41,478 + Psest_0038 0.84 +1.6
41,479 - Psest_0038 0.85 -0.6
41,479 - Psest_0038 0.85 -2.5
41,479 - Psest_0038 0.85 -0.7
41,479 - Psest_0038 0.85 -1.7
41,479 - Psest_0038 0.85 -0.3
41,479 - Psest_0038 0.85 -0.0
41,479 - Psest_0038 0.85 +0.9
41,676 + +0.6
41,685 + +1.7
41,685 + +0.4
41,685 + -2.3
41,686 - +1.5
41,686 - -0.3
41,932 - Psest_0039 0.20 +0.7
42,237 + Psest_0039 0.39 +1.3
42,237 + Psest_0039 0.39 +0.4
42,237 + Psest_0039 0.39 +1.7
42,238 - Psest_0039 0.39 -0.4
42,258 + Psest_0039 0.40 -0.7
42,258 + Psest_0039 0.40 +0.0
42,505 - Psest_0039 0.55 +0.2
42,600 + Psest_0039 0.61 +0.1
42,600 + Psest_0039 0.61 +1.8
42,600 + Psest_0039 0.61 -0.2
42,600 + Psest_0039 0.61 +0.0
42,600 + Psest_0039 0.61 +2.4
42,600 + Psest_0039 0.61 +1.8
42,600 + Psest_0039 0.61 +0.3
42,600 + Psest_0039 0.61 -0.5
42,600 + Psest_0039 0.61 +0.5
42,600 + Psest_0039 0.61 +1.8
42,600 + Psest_0039 0.61 +0.9
42,601 - Psest_0039 0.61 +1.0
42,601 - Psest_0039 0.61 +0.8
42,601 - Psest_0039 0.61 -2.8
42,601 - Psest_0039 0.61 +2.2
42,601 - Psest_0039 0.61 +1.2
42,762 + Psest_0039 0.70 +1.5
42,762 + Psest_0039 0.70 +0.5
42,762 + Psest_0039 0.70 +0.8
42,762 + Psest_0039 0.70 +0.4
42,762 + Psest_0039 0.70 -1.1
42,762 + Psest_0039 0.70 +0.6
42,762 + Psest_0039 0.70 +0.8
42,763 - Psest_0039 0.70 +0.0
42,763 - Psest_0039 0.70 +0.5
42,763 - Psest_0039 0.70 +0.5
42,763 - Psest_0039 0.70 -0.1
42,763 - Psest_0039 0.70 +0.4
42,763 - Psest_0039 0.70 +1.0
42,846 + Psest_0039 0.75 -0.4
42,846 + Psest_0039 0.75 +0.8
42,846 + Psest_0039 0.75 +0.8
42,847 - Psest_0039 0.75 +0.9
42,847 - Psest_0039 0.75 -0.1
42,847 - Psest_0039 0.75 -0.5
43,176 + -2.0
43,176 + -1.0
43,176 + +0.0
43,177 - -0.1
43,177 - +0.6
43,177 - +0.2
43,177 - +0.0
43,177 - +0.1
43,177 - -0.7
43,337 + -0.3
43,338 - +0.0
43,347 + +0.7
43,347 + -0.1
43,348 - +0.0
43,537 + Psest_0040 0.17 -1.6
43,538 - Psest_0040 0.17 +1.7
43,621 + Psest_0040 0.59 +0.3
43,621 + Psest_0040 0.59 +0.5
43,621 + Psest_0040 0.59 -0.9
43,621 + Psest_0040 0.59 -1.5
43,621 + Psest_0040 0.59 +0.8
43,621 + Psest_0040 0.59 -0.5
43,621 + Psest_0040 0.59 -0.5
43,621 + Psest_0040 0.59 +1.3
43,621 + Psest_0040 0.59 -0.5
43,622 + Psest_0040 0.60 +0.5
43,622 - Psest_0040 0.60 +0.2
43,622 - Psest_0040 0.60 +0.6
43,622 - Psest_0040 0.60 -0.1
43,622 - Psest_0040 0.60 -1.1
43,622 - Psest_0040 0.60 +1.2
43,622 - Psest_0040 0.60 +0.2
43,622 - Psest_0040 0.60 +0.4
43,699 + +0.3
43,818 + +0.3
43,818 + -1.9
43,819 - -1.0
43,819 - -0.2
43,914 + +0.9
43,915 - +0.6
43,946 + -0.7
43,947 - -0.5
44,093 + Psest_0041 0.14 +0.3

Or see this region's nucleotide sequence