Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0820

Experiment: Lactate-nitrite with YE; anaerobic; with copper; sample2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0817 and Psest_0818 are separated by 24 nucleotidesPsest_0818 and Psest_0819 are separated by 146 nucleotidesPsest_0819 and Psest_0820 are separated by 18 nucleotidesPsest_0820 and Psest_0821 overlap by 4 nucleotides Psest_0817: Psest_0817 - Ethylbenzene dehydrogenase., at 892,400 to 893,275 _0817 Psest_0818: Psest_0818 - hypothetical protein, at 893,300 to 893,446 _0818 Psest_0819: Psest_0819 - Cytochrome c551/c552, at 893,593 to 893,907 _0819 Psest_0820: Psest_0820 - hypothetical protein, at 893,926 to 894,267 _0820 Psest_0821: Psest_0821 - Cytochrome D1 heme domain., at 894,264 to 895,439 _0821 Position (kb) 893 894 895Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 892.931 kb on + strand, within Psest_0817at 892.931 kb on + strand, within Psest_0817at 892.931 kb on + strand, within Psest_0817at 892.931 kb on + strand, within Psest_0817at 892.931 kb on + strand, within Psest_0817at 892.932 kb on - strand, within Psest_0817at 892.932 kb on - strand, within Psest_0817at 892.932 kb on - strand, within Psest_0817at 892.932 kb on - strand, within Psest_0817at 892.964 kb on + strand, within Psest_0817at 892.964 kb on + strand, within Psest_0817at 892.965 kb on - strand, within Psest_0817at 892.965 kb on - strand, within Psest_0817at 892.967 kb on + strand, within Psest_0817at 892.967 kb on + strand, within Psest_0817at 892.967 kb on + strand, within Psest_0817at 892.968 kb on - strand, within Psest_0817at 892.968 kb on - strand, within Psest_0817at 893.086 kb on + strand, within Psest_0817at 893.086 kb on + strand, within Psest_0817at 893.087 kb on - strand, within Psest_0817at 893.087 kb on - strand, within Psest_0817at 893.159 kb on + strand, within Psest_0817at 893.159 kb on + strand, within Psest_0817at 893.159 kb on + strand, within Psest_0817at 893.392 kb on - strand, within Psest_0818at 893.585 kb on + strandat 893.585 kb on + strandat 893.585 kb on + strandat 893.585 kb on + strandat 893.585 kb on + strandat 893.586 kb on - strandat 893.586 kb on - strandat 893.591 kb on + strandat 893.591 kb on + strandat 893.591 kb on + strandat 893.591 kb on + strandat 893.591 kb on + strandat 893.592 kb on - strandat 893.592 kb on - strandat 893.592 kb on - strandat 893.905 kb on + strandat 893.905 kb on + strandat 893.905 kb on + strandat 893.905 kb on + strandat 893.905 kb on + strandat 893.905 kb on + strandat 893.906 kb on - strandat 893.906 kb on - strandat 893.906 kb on - strandat 893.906 kb on - strandat 893.906 kb on - strandat 893.906 kb on - strandat 893.906 kb on - strandat 894.047 kb on + strand, within Psest_0820at 894.047 kb on + strand, within Psest_0820at 894.047 kb on + strand, within Psest_0820at 894.048 kb on - strand, within Psest_0820at 894.048 kb on - strand, within Psest_0820at 894.048 kb on - strand, within Psest_0820at 894.048 kb on - strand, within Psest_0820at 894.048 kb on - strand, within Psest_0820at 894.483 kb on + strand, within Psest_0821at 894.483 kb on + strand, within Psest_0821at 894.483 kb on + strand, within Psest_0821at 894.483 kb on + strand, within Psest_0821at 894.484 kb on - strand, within Psest_0821at 894.618 kb on + strand, within Psest_0821at 894.618 kb on + strand, within Psest_0821at 894.619 kb on - strand, within Psest_0821at 894.619 kb on - strand, within Psest_0821at 894.654 kb on - strand, within Psest_0821at 894.756 kb on + strand, within Psest_0821at 894.756 kb on + strand, within Psest_0821at 894.756 kb on + strand, within Psest_0821at 894.756 kb on + strand, within Psest_0821at 894.756 kb on + strand, within Psest_0821at 894.756 kb on + strand, within Psest_0821at 894.757 kb on - strand, within Psest_0821at 894.757 kb on - strand, within Psest_0821at 894.757 kb on - strand, within Psest_0821at 894.757 kb on - strand, within Psest_0821at 894.852 kb on + strand, within Psest_0821at 894.885 kb on + strand, within Psest_0821at 894.885 kb on + strand, within Psest_0821at 894.885 kb on + strand, within Psest_0821at 894.885 kb on + strand, within Psest_0821at 894.885 kb on + strand, within Psest_0821at 894.885 kb on + strand, within Psest_0821at 894.885 kb on + strand, within Psest_0821at 894.886 kb on - strand, within Psest_0821at 894.886 kb on - strand, within Psest_0821at 894.886 kb on - strand, within Psest_0821at 894.886 kb on - strand, within Psest_0821at 894.886 kb on - strand, within Psest_0821at 894.886 kb on - strand, within Psest_0821at 894.886 kb on - strand, within Psest_0821at 894.886 kb on - strand, within Psest_0821at 894.886 kb on - strand, within Psest_0821at 894.886 kb on - strand, within Psest_0821at 894.886 kb on - strand, within Psest_0821at 895.002 kb on + strand, within Psest_0821at 895.002 kb on + strand, within Psest_0821at 895.210 kb on + strand, within Psest_0821at 895.211 kb on - strand, within Psest_0821at 895.211 kb on - strand, within Psest_0821

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-nitrite with YE; anaerobic; with copper; sample2
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892,931 + Psest_0817 0.61 -1.2
892,931 + Psest_0817 0.61 -0.9
892,931 + Psest_0817 0.61 -1.3
892,931 + Psest_0817 0.61 -1.0
892,931 + Psest_0817 0.61 +0.4
892,932 - Psest_0817 0.61 -0.7
892,932 - Psest_0817 0.61 +0.4
892,932 - Psest_0817 0.61 -1.0
892,932 - Psest_0817 0.61 +0.4
892,964 + Psest_0817 0.64 -1.5
892,964 + Psest_0817 0.64 +1.4
892,965 - Psest_0817 0.64 +1.4
892,965 - Psest_0817 0.64 -2.1
892,967 + Psest_0817 0.65 +1.4
892,967 + Psest_0817 0.65 -0.7
892,967 + Psest_0817 0.65 +0.4
892,968 - Psest_0817 0.65 -0.9
892,968 - Psest_0817 0.65 -3.0
893,086 + Psest_0817 0.78 +0.4
893,086 + Psest_0817 0.78 -1.0
893,087 - Psest_0817 0.78 -1.0
893,087 - Psest_0817 0.78 -0.9
893,159 + Psest_0817 0.87 +0.0
893,159 + Psest_0817 0.87 -1.1
893,159 + Psest_0817 0.87 -1.4
893,392 - Psest_0818 0.63 -1.6
893,585 + -3.3
893,585 + +0.4
893,585 + +0.0
893,585 + +0.4
893,585 + -1.7
893,586 - -4.4
893,586 - -3.8
893,591 + -3.4
893,591 + -3.0
893,591 + -1.2
893,591 + -2.9
893,591 + -3.6
893,592 - -2.6
893,592 - -4.8
893,592 - -1.9
893,905 + -0.0
893,905 + -1.9
893,905 + -0.6
893,905 + -1.0
893,905 + +0.2
893,905 + -0.6
893,906 - -1.6
893,906 - -3.2
893,906 - -1.2
893,906 - -4.0
893,906 - -2.3
893,906 - -2.2
893,906 - -1.5
894,047 + Psest_0820 0.35 -1.6
894,047 + Psest_0820 0.35 -2.9
894,047 + Psest_0820 0.35 -3.3
894,048 - Psest_0820 0.36 -2.5
894,048 - Psest_0820 0.36 -1.3
894,048 - Psest_0820 0.36 -0.7
894,048 - Psest_0820 0.36 -1.2
894,048 - Psest_0820 0.36 -0.7
894,483 + Psest_0821 0.19 -2.2
894,483 + Psest_0821 0.19 -1.3
894,483 + Psest_0821 0.19 -2.6
894,483 + Psest_0821 0.19 -0.6
894,484 - Psest_0821 0.19 -0.1
894,618 + Psest_0821 0.30 -0.4
894,618 + Psest_0821 0.30 -0.8
894,619 - Psest_0821 0.30 -3.0
894,619 - Psest_0821 0.30 -0.7
894,654 - Psest_0821 0.33 -0.6
894,756 + Psest_0821 0.42 -1.6
894,756 + Psest_0821 0.42 -2.2
894,756 + Psest_0821 0.42 -2.4
894,756 + Psest_0821 0.42 -0.8
894,756 + Psest_0821 0.42 -0.9
894,756 + Psest_0821 0.42 -2.3
894,757 - Psest_0821 0.42 -2.7
894,757 - Psest_0821 0.42 -0.9
894,757 - Psest_0821 0.42 -3.0
894,757 - Psest_0821 0.42 -1.3
894,852 + Psest_0821 0.50 -1.7
894,885 + Psest_0821 0.53 -1.1
894,885 + Psest_0821 0.53 +0.2
894,885 + Psest_0821 0.53 -2.1
894,885 + Psest_0821 0.53 -1.5
894,885 + Psest_0821 0.53 -1.2
894,885 + Psest_0821 0.53 -1.6
894,885 + Psest_0821 0.53 -1.7
894,886 - Psest_0821 0.53 -1.6
894,886 - Psest_0821 0.53 -1.2
894,886 - Psest_0821 0.53 -0.5
894,886 - Psest_0821 0.53 -1.6
894,886 - Psest_0821 0.53 -1.7
894,886 - Psest_0821 0.53 -1.2
894,886 - Psest_0821 0.53 -0.6
894,886 - Psest_0821 0.53 -1.2
894,886 - Psest_0821 0.53 -2.9
894,886 - Psest_0821 0.53 -0.2
894,886 - Psest_0821 0.53 -1.3
895,002 + Psest_0821 0.63 -1.6
895,002 + Psest_0821 0.63 -1.2
895,210 + Psest_0821 0.80 +0.8
895,211 - Psest_0821 0.81 -1.6
895,211 - Psest_0821 0.81 -1.7

Or see this region's nucleotide sequence