Experiment: Lactate-nitrite with YE; anaerobic; with copper; sample2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0551 and Psest_0552 are separated by 82 nucleotides Psest_0552 and Psest_0553 are separated by 304 nucleotides Psest_0553 and Psest_0554 are separated by 0 nucleotides
Psest_0551: Psest_0551 - PEP phosphonomutase and related enzymes, at 604,706 to 605,569
_0551
Psest_0552: Psest_0552 - conserved hypothetical protein, proteobacterial, at 605,652 to 606,371
_0552
Psest_0553: Psest_0553 - DnaK suppressor protein, at 606,676 to 606,942
_0553
Psest_0554: Psest_0554 - Signal transduction histidine kinase, at 606,943 to 608,124
_0554
Position (kb) 605
606
607 Strain fitness (log2 ratio) -2
-1
0
1
2 at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.704 kb on - strand at 604.704 kb on - strand at 604.704 kb on - strand at 604.704 kb on - strand at 604.704 kb on - strand at 604.704 kb on - strand at 604.704 kb on - strand at 604.704 kb on - strand at 604.705 kb on + strand at 604.706 kb on - strand at 604.706 kb on - strand at 604.706 kb on - strand at 604.900 kb on + strand, within Psest_0551 at 604.900 kb on + strand, within Psest_0551 at 604.901 kb on - strand, within Psest_0551 at 604.901 kb on - strand, within Psest_0551 at 604.933 kb on + strand, within Psest_0551 at 605.339 kb on + strand, within Psest_0551 at 605.417 kb on + strand, within Psest_0551 at 605.417 kb on + strand, within Psest_0551 at 605.418 kb on - strand, within Psest_0551 at 605.418 kb on - strand, within Psest_0551 at 605.418 kb on - strand, within Psest_0551 at 605.441 kb on + strand, within Psest_0551 at 605.441 kb on + strand, within Psest_0551 at 605.441 kb on + strand, within Psest_0551 at 605.441 kb on + strand, within Psest_0551 at 605.442 kb on - strand, within Psest_0551 at 605.442 kb on - strand, within Psest_0551 at 605.510 kb on + strand at 605.510 kb on + strand at 605.510 kb on + strand at 605.511 kb on - strand at 605.528 kb on + strand at 605.528 kb on + strand at 605.528 kb on + strand at 605.528 kb on + strand at 605.528 kb on + strand at 605.529 kb on - strand at 605.529 kb on - strand at 605.529 kb on - strand at 605.529 kb on - strand at 605.529 kb on - strand at 605.549 kb on + strand at 605.549 kb on + strand at 605.549 kb on + strand at 605.549 kb on + strand at 605.549 kb on + strand at 605.549 kb on + strand at 605.550 kb on - strand at 605.550 kb on - strand at 605.550 kb on - strand at 605.567 kb on + strand at 605.568 kb on - strand at 605.698 kb on + strand at 605.755 kb on + strand, within Psest_0552 at 605.755 kb on + strand, within Psest_0552 at 605.755 kb on + strand, within Psest_0552 at 605.842 kb on + strand, within Psest_0552 at 605.842 kb on + strand, within Psest_0552 at 605.843 kb on - strand, within Psest_0552 at 605.843 kb on - strand, within Psest_0552 at 605.872 kb on + strand, within Psest_0552 at 605.872 kb on + strand, within Psest_0552 at 605.873 kb on - strand, within Psest_0552 at 605.925 kb on + strand, within Psest_0552 at 605.925 kb on + strand, within Psest_0552 at 605.925 kb on + strand, within Psest_0552 at 605.926 kb on - strand, within Psest_0552 at 605.926 kb on - strand, within Psest_0552 at 606.001 kb on + strand, within Psest_0552 at 606.001 kb on + strand, within Psest_0552 at 606.001 kb on + strand, within Psest_0552 at 606.001 kb on + strand, within Psest_0552 at 606.001 kb on + strand, within Psest_0552 at 606.001 kb on + strand, within Psest_0552 at 606.001 kb on + strand, within Psest_0552 at 606.002 kb on - strand, within Psest_0552 at 606.002 kb on - strand, within Psest_0552 at 606.002 kb on - strand, within Psest_0552 at 606.002 kb on - strand, within Psest_0552 at 606.004 kb on + strand, within Psest_0552 at 606.005 kb on - strand, within Psest_0552 at 606.005 kb on - strand, within Psest_0552 at 606.005 kb on - strand, within Psest_0552 at 606.065 kb on - strand, within Psest_0552 at 606.106 kb on + strand, within Psest_0552 at 606.106 kb on + strand, within Psest_0552 at 606.106 kb on + strand, within Psest_0552 at 606.106 kb on + strand, within Psest_0552 at 606.107 kb on - strand, within Psest_0552 at 606.107 kb on - strand, within Psest_0552 at 606.107 kb on - strand, within Psest_0552 at 606.169 kb on + strand, within Psest_0552 at 606.169 kb on + strand, within Psest_0552 at 606.169 kb on + strand, within Psest_0552 at 606.169 kb on + strand, within Psest_0552 at 606.169 kb on + strand, within Psest_0552 at 606.169 kb on + strand, within Psest_0552 at 606.169 kb on + strand, within Psest_0552 at 606.170 kb on - strand, within Psest_0552 at 606.170 kb on - strand, within Psest_0552 at 606.170 kb on - strand, within Psest_0552 at 606.170 kb on - strand, within Psest_0552 at 606.170 kb on - strand, within Psest_0552 at 606.170 kb on - strand, within Psest_0552 at 606.170 kb on - strand, within Psest_0552 at 606.170 kb on - strand, within Psest_0552 at 606.170 kb on - strand, within Psest_0552 at 606.231 kb on + strand, within Psest_0552 at 606.358 kb on + strand at 606.358 kb on + strand at 606.358 kb on + strand at 606.358 kb on + strand at 606.358 kb on + strand at 606.358 kb on + strand at 606.359 kb on - strand at 606.359 kb on - strand at 606.359 kb on - strand at 606.359 kb on - strand at 606.371 kb on + strand at 606.372 kb on - strand at 606.372 kb on - strand at 606.372 kb on - strand at 606.459 kb on + strand at 606.459 kb on + strand at 606.459 kb on + strand at 606.460 kb on - strand at 606.460 kb on - strand at 606.489 kb on - strand at 606.537 kb on - strand at 606.537 kb on - strand at 606.905 kb on - strand, within Psest_0553 at 607.011 kb on + strand at 607.097 kb on + strand, within Psest_0554 at 607.360 kb on + strand, within Psest_0554 at 607.360 kb on + strand, within Psest_0554 at 607.360 kb on + strand, within Psest_0554 at 607.361 kb on - strand, within Psest_0554
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrite with YE; anaerobic; with copper; sample2 remove 604,703 + +1.5 604,703 + -1.0 604,703 + -1.8 604,703 + +2.2 604,703 + +1.2 604,703 + -0.4 604,703 + -0.5 604,703 + -0.2 604,703 + +0.9 604,703 + -0.7 604,703 + +1.5 604,703 + -2.1 604,703 + +0.9 604,703 + -1.1 604,704 - +0.5 604,704 - +1.0 604,704 - -0.6 604,704 - -1.0 604,704 - +0.2 604,704 - -0.2 604,704 - -1.2 604,704 - +0.7 604,705 + +1.1 604,706 - +1.1 604,706 - +1.2 604,706 - -0.1 604,900 + Psest_0551 0.22 +0.2 604,900 + Psest_0551 0.22 -0.5 604,901 - Psest_0551 0.23 +0.7 604,901 - Psest_0551 0.23 +0.7 604,933 + Psest_0551 0.26 -1.2 605,339 + Psest_0551 0.73 -0.1 605,417 + Psest_0551 0.82 +0.6 605,417 + Psest_0551 0.82 -1.3 605,418 - Psest_0551 0.82 +0.5 605,418 - Psest_0551 0.82 -0.5 605,418 - Psest_0551 0.82 -0.5 605,441 + Psest_0551 0.85 +0.2 605,441 + Psest_0551 0.85 -0.1 605,441 + Psest_0551 0.85 -0.8 605,441 + Psest_0551 0.85 -0.3 605,442 - Psest_0551 0.85 +0.6 605,442 - Psest_0551 0.85 +2.6 605,510 + +1.2 605,510 + -0.5 605,510 + +2.1 605,511 - +0.2 605,528 + +2.2 605,528 + +1.1 605,528 + -0.1 605,528 + +0.6 605,528 + +1.5 605,529 - +0.3 605,529 - +0.3 605,529 - +1.0 605,529 - -0.1 605,529 - +0.3 605,549 + +1.2 605,549 + -0.1 605,549 + -0.5 605,549 + +0.8 605,549 + +0.2 605,549 + -0.5 605,550 - +2.2 605,550 - -0.2 605,550 - -0.2 605,567 + +0.7 605,568 - +1.5 605,698 + +0.7 605,755 + Psest_0552 0.14 +2.0 605,755 + Psest_0552 0.14 +0.7 605,755 + Psest_0552 0.14 +0.1 605,842 + Psest_0552 0.26 +0.1 605,842 + Psest_0552 0.26 +1.6 605,843 - Psest_0552 0.27 +2.4 605,843 - Psest_0552 0.27 +0.9 605,872 + Psest_0552 0.31 -0.8 605,872 + Psest_0552 0.31 +0.3 605,873 - Psest_0552 0.31 +0.5 605,925 + Psest_0552 0.38 -1.0 605,925 + Psest_0552 0.38 +0.7 605,925 + Psest_0552 0.38 -0.8 605,926 - Psest_0552 0.38 +1.9 605,926 - Psest_0552 0.38 -0.1 606,001 + Psest_0552 0.48 +0.8 606,001 + Psest_0552 0.48 +1.7 606,001 + Psest_0552 0.48 +0.6 606,001 + Psest_0552 0.48 +1.0 606,001 + Psest_0552 0.48 -1.1 606,001 + Psest_0552 0.48 +0.0 606,001 + Psest_0552 0.48 +0.6 606,002 - Psest_0552 0.49 +0.8 606,002 - Psest_0552 0.49 -0.1 606,002 - Psest_0552 0.49 +0.6 606,002 - Psest_0552 0.49 -1.3 606,004 + Psest_0552 0.49 +0.5 606,005 - Psest_0552 0.49 +0.2 606,005 - Psest_0552 0.49 +0.2 606,005 - Psest_0552 0.49 -0.1 606,065 - Psest_0552 0.57 -0.8 606,106 + Psest_0552 0.63 +0.7 606,106 + Psest_0552 0.63 +1.4 606,106 + Psest_0552 0.63 +0.9 606,106 + Psest_0552 0.63 -1.1 606,107 - Psest_0552 0.63 +1.0 606,107 - Psest_0552 0.63 +0.1 606,107 - Psest_0552 0.63 +1.1 606,169 + Psest_0552 0.72 +0.8 606,169 + Psest_0552 0.72 -0.8 606,169 + Psest_0552 0.72 -0.8 606,169 + Psest_0552 0.72 -0.1 606,169 + Psest_0552 0.72 +2.5 606,169 + Psest_0552 0.72 +1.0 606,169 + Psest_0552 0.72 +0.1 606,170 - Psest_0552 0.72 +0.5 606,170 - Psest_0552 0.72 +1.4 606,170 - Psest_0552 0.72 +0.4 606,170 - Psest_0552 0.72 +0.5 606,170 - Psest_0552 0.72 +0.5 606,170 - Psest_0552 0.72 +1.9 606,170 - Psest_0552 0.72 +2.1 606,170 - Psest_0552 0.72 +0.4 606,170 - Psest_0552 0.72 +0.0 606,231 + Psest_0552 0.80 +1.6 606,358 + +1.9 606,358 + +1.5 606,358 + +0.9 606,358 + -0.1 606,358 + +0.9 606,358 + +0.9 606,359 - +0.7 606,359 - +0.5 606,359 - +1.1 606,359 - -0.5 606,371 + -0.3 606,372 - -0.5 606,372 - +0.5 606,372 - -1.5 606,459 + +0.9 606,459 + +1.3 606,459 + -0.7 606,460 - -0.7 606,460 - +0.8 606,489 - -1.4 606,537 - +1.1 606,537 - +0.8 606,905 - Psest_0553 0.86 +1.3 607,011 + -1.6 607,097 + Psest_0554 0.13 -0.1 607,360 + Psest_0554 0.35 -1.2 607,360 + Psest_0554 0.35 -0.8 607,360 + Psest_0554 0.35 +1.1 607,361 - Psest_0554 0.35 -0.1
Or see this region's nucleotide sequence