Experiment: Lactate-nitrite with YE; anaerobic; with copper; sample1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0799 and Psest_0800 are separated by 118 nucleotides Psest_0800 and Psest_0801 are separated by 336 nucleotides
Psest_0799: Psest_0799 - Uncharacterized protein involved in response to NO, at 873,425 to 874,615
_0799
Psest_0800: Psest_0800 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 874,734 to 875,477
_0800
Psest_0801: Psest_0801 - CBS-domain-containing membrane protein, at 875,814 to 876,950
_0801
Position (kb) 874
875
876 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 873.853 kb on + strand, within Psest_0799 at 873.853 kb on + strand, within Psest_0799 at 873.854 kb on - strand, within Psest_0799 at 873.854 kb on - strand, within Psest_0799 at 874.208 kb on + strand, within Psest_0799 at 874.252 kb on + strand, within Psest_0799 at 874.556 kb on + strand at 874.556 kb on + strand at 874.556 kb on + strand at 874.556 kb on + strand at 874.556 kb on + strand at 874.556 kb on + strand at 874.556 kb on + strand at 874.556 kb on + strand at 874.556 kb on + strand at 874.556 kb on + strand at 874.557 kb on - strand at 874.557 kb on - strand at 874.557 kb on - strand at 874.557 kb on - strand at 874.557 kb on - strand at 874.557 kb on - strand at 874.557 kb on - strand at 874.557 kb on - strand at 874.557 kb on - strand at 874.596 kb on + strand at 874.597 kb on - strand at 874.664 kb on + strand at 874.664 kb on + strand at 874.664 kb on + strand at 874.664 kb on + strand at 874.665 kb on - strand at 874.668 kb on + strand at 875.078 kb on + strand, within Psest_0800 at 875.078 kb on + strand, within Psest_0800 at 875.079 kb on - strand, within Psest_0800 at 875.175 kb on + strand, within Psest_0800 at 875.175 kb on + strand, within Psest_0800 at 875.175 kb on + strand, within Psest_0800 at 875.175 kb on + strand, within Psest_0800 at 875.175 kb on + strand, within Psest_0800 at 875.175 kb on + strand, within Psest_0800 at 875.175 kb on + strand, within Psest_0800 at 875.175 kb on + strand, within Psest_0800 at 875.176 kb on - strand, within Psest_0800 at 875.176 kb on - strand, within Psest_0800 at 875.176 kb on - strand, within Psest_0800 at 875.176 kb on - strand, within Psest_0800 at 875.176 kb on - strand, within Psest_0800 at 875.176 kb on - strand, within Psest_0800 at 875.178 kb on - strand, within Psest_0800 at 875.249 kb on + strand, within Psest_0800 at 875.465 kb on + strand at 875.465 kb on + strand at 875.465 kb on + strand at 875.465 kb on + strand at 875.465 kb on + strand at 875.465 kb on + strand at 875.466 kb on - strand at 875.466 kb on - strand at 875.466 kb on - strand at 875.466 kb on - strand at 875.466 kb on - strand at 875.466 kb on - strand at 875.466 kb on - strand at 875.598 kb on + strand at 875.599 kb on - strand at 876.303 kb on + strand, within Psest_0801 at 876.303 kb on + strand, within Psest_0801 at 876.303 kb on + strand, within Psest_0801 at 876.304 kb on - strand, within Psest_0801 at 876.304 kb on - strand, within Psest_0801 at 876.304 kb on - strand, within Psest_0801 at 876.304 kb on - strand, within Psest_0801 at 876.304 kb on - strand, within Psest_0801 at 876.304 kb on - strand, within Psest_0801 at 876.444 kb on + strand, within Psest_0801 at 876.445 kb on - strand, within Psest_0801 at 876.445 kb on - strand, within Psest_0801 at 876.445 kb on - strand, within Psest_0801
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrite with YE; anaerobic; with copper; sample1 remove 873,853 + Psest_0799 0.36 +0.9 873,853 + Psest_0799 0.36 -2.5 873,854 - Psest_0799 0.36 -3.0 873,854 - Psest_0799 0.36 -0.6 874,208 + Psest_0799 0.66 -2.4 874,252 + Psest_0799 0.69 -2.1 874,556 + -2.1 874,556 + -1.3 874,556 + -3.0 874,556 + -3.1 874,556 + -1.6 874,556 + -2.0 874,556 + -0.6 874,556 + -0.6 874,556 + -2.7 874,556 + -3.6 874,557 - -0.9 874,557 - -1.1 874,557 - +1.2 874,557 - -0.6 874,557 - -3.7 874,557 - -0.4 874,557 - +0.6 874,557 - -0.8 874,557 - +1.4 874,596 + -0.2 874,597 - -0.5 874,664 + +0.0 874,664 + -0.5 874,664 + +1.0 874,664 + -0.2 874,665 - -0.5 874,668 + +0.5 875,078 + Psest_0800 0.46 -0.5 875,078 + Psest_0800 0.46 +1.6 875,079 - Psest_0800 0.46 -0.4 875,175 + Psest_0800 0.59 +2.3 875,175 + Psest_0800 0.59 -1.1 875,175 + Psest_0800 0.59 -0.4 875,175 + Psest_0800 0.59 +0.5 875,175 + Psest_0800 0.59 -2.4 875,175 + Psest_0800 0.59 +0.7 875,175 + Psest_0800 0.59 -0.1 875,175 + Psest_0800 0.59 +0.7 875,176 - Psest_0800 0.59 +0.5 875,176 - Psest_0800 0.59 -3.1 875,176 - Psest_0800 0.59 -0.3 875,176 - Psest_0800 0.59 -0.3 875,176 - Psest_0800 0.59 +0.8 875,176 - Psest_0800 0.59 -0.6 875,178 - Psest_0800 0.60 -0.1 875,249 + Psest_0800 0.69 -0.2 875,465 + +0.5 875,465 + -1.4 875,465 + +1.2 875,465 + -0.1 875,465 + -0.7 875,465 + +0.2 875,466 - +0.5 875,466 - -0.7 875,466 - +0.7 875,466 - -0.0 875,466 - +1.0 875,466 - +0.9 875,466 - -0.5 875,598 + -0.1 875,599 - +0.1 876,303 + Psest_0801 0.43 -0.4 876,303 + Psest_0801 0.43 +1.5 876,303 + Psest_0801 0.43 +0.3 876,304 - Psest_0801 0.43 +0.6 876,304 - Psest_0801 0.43 +0.2 876,304 - Psest_0801 0.43 +2.2 876,304 - Psest_0801 0.43 +1.8 876,304 - Psest_0801 0.43 -1.0 876,304 - Psest_0801 0.43 +0.3 876,444 + Psest_0801 0.55 +1.5 876,445 - Psest_0801 0.55 +0.2 876,445 - Psest_0801 0.55 +0.5 876,445 - Psest_0801 0.55 +0.6
Or see this region's nucleotide sequence