Experiment: Lactate-nitrite with YE; anaerobic; sample3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0883 and Psest_0884 overlap by 4 nucleotides Psest_0884 and Psest_0885 are separated by 644 nucleotides
Psest_0883: Psest_0883 - hypothetical protein, at 961,602 to 961,928
_0883
Psest_0884: Psest_0884 - Toxin with endonuclease activity YhaV., at 961,925 to 962,428
_0884
Psest_0885: Psest_0885 - Uncharacterized conserved protein, at 963,073 to 963,375
_0885
Position (kb)
961
962
963 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 960.949 kb on - strand at 960.991 kb on + strand at 960.991 kb on + strand at 960.992 kb on - strand at 960.992 kb on - strand at 960.992 kb on - strand at 960.992 kb on - strand at 960.992 kb on - strand at 961.039 kb on + strand at 961.161 kb on + strand at 961.161 kb on + strand at 961.161 kb on + strand at 961.343 kb on + strand at 961.393 kb on + strand at 961.393 kb on + strand at 961.393 kb on + strand at 961.393 kb on + strand at 961.393 kb on + strand at 961.393 kb on + strand at 961.393 kb on + strand at 961.393 kb on + strand at 961.393 kb on + strand at 961.393 kb on + strand at 961.393 kb on + strand at 961.393 kb on + strand at 961.393 kb on + strand at 961.393 kb on + strand at 961.393 kb on + strand at 961.393 kb on + strand at 961.393 kb on + strand at 961.393 kb on + strand at 961.393 kb on + strand at 961.393 kb on + strand at 961.393 kb on + strand at 961.393 kb on + strand at 961.394 kb on - strand at 961.394 kb on - strand at 961.394 kb on - strand at 961.394 kb on - strand at 961.394 kb on - strand at 961.394 kb on - strand at 961.394 kb on - strand at 961.394 kb on - strand at 961.394 kb on - strand at 961.394 kb on - strand at 961.394 kb on - strand at 961.394 kb on - strand at 961.394 kb on - strand at 961.394 kb on - strand at 961.394 kb on - strand at 961.394 kb on - strand at 961.394 kb on - strand at 961.394 kb on - strand at 961.421 kb on + strand at 961.422 kb on - strand at 961.422 kb on - strand at 961.458 kb on + strand at 961.458 kb on + strand at 961.458 kb on + strand at 961.458 kb on + strand at 961.458 kb on + strand at 961.458 kb on + strand at 961.458 kb on + strand at 961.458 kb on + strand at 961.458 kb on + strand at 961.458 kb on + strand at 961.459 kb on - strand at 961.459 kb on - strand at 961.459 kb on - strand at 961.459 kb on - strand at 961.459 kb on - strand at 961.459 kb on - strand at 961.459 kb on - strand at 961.459 kb on - strand at 961.459 kb on - strand at 961.459 kb on - strand at 961.459 kb on - strand at 961.459 kb on - strand at 961.459 kb on - strand at 961.459 kb on - strand at 961.491 kb on - strand at 961.514 kb on + strand at 961.515 kb on - strand at 961.553 kb on + strand at 961.553 kb on + strand at 961.554 kb on - strand at 961.554 kb on - strand at 961.688 kb on - strand, within Psest_0883 at 961.840 kb on + strand, within Psest_0883 at 961.840 kb on + strand, within Psest_0883 at 961.840 kb on + strand, within Psest_0883 at 961.840 kb on + strand, within Psest_0883 at 961.841 kb on - strand, within Psest_0883 at 961.889 kb on + strand, within Psest_0883 at 961.891 kb on + strand, within Psest_0883 at 961.891 kb on + strand, within Psest_0883 at 961.891 kb on + strand, within Psest_0883 at 961.892 kb on - strand, within Psest_0883 at 961.892 kb on - strand, within Psest_0883 at 961.892 kb on - strand, within Psest_0883 at 961.892 kb on - strand, within Psest_0883 at 961.892 kb on - strand, within Psest_0883 at 961.892 kb on - strand, within Psest_0883 at 961.892 kb on - strand, within Psest_0883 at 961.892 kb on - strand, within Psest_0883 at 961.892 kb on - strand, within Psest_0883 at 961.892 kb on - strand, within Psest_0883 at 961.892 kb on - strand, within Psest_0883 at 961.892 kb on - strand, within Psest_0883 at 961.942 kb on + strand at 961.943 kb on - strand at 961.943 kb on - strand at 961.971 kb on + strand at 961.971 kb on + strand at 961.971 kb on + strand at 961.972 kb on - strand at 961.972 kb on - strand at 961.972 kb on - strand at 961.972 kb on - strand at 962.173 kb on + strand, within Psest_0884 at 962.173 kb on + strand, within Psest_0884 at 962.173 kb on + strand, within Psest_0884 at 962.173 kb on + strand, within Psest_0884 at 962.173 kb on + strand, within Psest_0884 at 962.173 kb on + strand, within Psest_0884 at 962.173 kb on + strand, within Psest_0884 at 962.174 kb on - strand, within Psest_0884 at 962.174 kb on - strand, within Psest_0884 at 962.174 kb on - strand, within Psest_0884 at 962.174 kb on - strand, within Psest_0884 at 962.174 kb on - strand, within Psest_0884 at 962.174 kb on - strand, within Psest_0884 at 962.174 kb on - strand, within Psest_0884 at 962.244 kb on + strand, within Psest_0884 at 962.245 kb on - strand, within Psest_0884 at 962.288 kb on + strand, within Psest_0884 at 962.288 kb on + strand, within Psest_0884 at 962.289 kb on - strand, within Psest_0884 at 962.309 kb on + strand, within Psest_0884 at 962.309 kb on + strand, within Psest_0884 at 962.309 kb on + strand, within Psest_0884 at 962.362 kb on + strand, within Psest_0884 at 962.401 kb on - strand at 962.557 kb on + strand at 962.557 kb on + strand at 962.557 kb on + strand at 962.557 kb on + strand at 962.558 kb on - strand at 962.558 kb on - strand at 962.558 kb on - strand at 962.558 kb on - strand at 962.558 kb on - strand at 962.558 kb on - strand at 962.558 kb on - strand at 962.558 kb on - strand at 962.559 kb on + strand at 962.559 kb on + strand at 962.566 kb on + strand at 962.631 kb on + strand at 962.690 kb on + strand at 962.690 kb on + strand at 962.694 kb on + strand at 962.694 kb on + strand at 962.694 kb on + strand at 962.694 kb on + strand at 962.694 kb on + strand at 962.694 kb on + strand at 962.695 kb on - strand at 962.695 kb on - strand at 962.695 kb on - strand at 962.695 kb on - strand at 962.695 kb on - strand at 962.695 kb on - strand at 962.717 kb on + strand at 962.737 kb on + strand at 962.738 kb on - strand at 962.738 kb on - strand at 962.873 kb on + strand at 962.874 kb on - strand at 962.952 kb on + strand at 962.977 kb on + strand at 962.977 kb on + strand at 962.977 kb on + strand at 962.978 kb on - strand at 962.978 kb on - strand at 962.978 kb on - strand at 963.019 kb on - strand at 963.019 kb on - strand at 963.380 kb on + strand at 963.380 kb on + strand at 963.380 kb on + strand at 963.381 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrite with YE; anaerobic; sample3 remove 960,949 - +2.3 960,991 + -0.9 960,991 + -0.6 960,992 - +1.2 960,992 - -0.2 960,992 - +1.4 960,992 - +0.1 960,992 - +0.8 961,039 + +1.1 961,161 + -0.1 961,161 + -0.6 961,161 + -0.5 961,343 + +0.7 961,393 + +0.1 961,393 + -0.5 961,393 + -0.1 961,393 + -0.7 961,393 + -0.2 961,393 + +1.7 961,393 + -1.3 961,393 + -0.3 961,393 + +1.4 961,393 + +0.4 961,393 + +2.3 961,393 + -1.1 961,393 + -0.7 961,393 + -0.0 961,393 + +0.9 961,393 + -0.6 961,393 + -0.4 961,393 + +0.9 961,393 + +0.8 961,393 + +0.3 961,393 + +0.4 961,393 + +0.1 961,394 - -0.2 961,394 - +0.1 961,394 - +1.3 961,394 - +0.3 961,394 - -0.1 961,394 - +0.8 961,394 - +1.3 961,394 - -2.0 961,394 - -2.3 961,394 - +0.9 961,394 - -0.2 961,394 - +1.6 961,394 - +0.6 961,394 - +0.3 961,394 - -0.5 961,394 - +2.3 961,394 - -0.0 961,394 - +0.6 961,421 + +0.1 961,422 - +1.1 961,422 - -0.4 961,458 + -0.6 961,458 + -0.2 961,458 + -0.1 961,458 + +0.3 961,458 + -0.2 961,458 + -0.0 961,458 + +0.3 961,458 + +0.5 961,458 + -0.7 961,458 + -1.3 961,459 - -2.3 961,459 - -0.7 961,459 - -0.4 961,459 - -0.0 961,459 - +0.1 961,459 - +0.3 961,459 - +0.2 961,459 - -1.3 961,459 - +0.5 961,459 - -0.1 961,459 - +0.4 961,459 - -0.9 961,459 - -0.0 961,459 - -0.1 961,491 - -0.7 961,514 + -1.6 961,515 - +0.3 961,553 + -0.6 961,553 + -1.0 961,554 - -1.0 961,554 - -0.9 961,688 - Psest_0883 0.26 +1.0 961,840 + Psest_0883 0.73 -0.1 961,840 + Psest_0883 0.73 +1.7 961,840 + Psest_0883 0.73 -0.3 961,840 + Psest_0883 0.73 -0.3 961,841 - Psest_0883 0.73 -0.3 961,889 + Psest_0883 0.88 -2.5 961,891 + Psest_0883 0.88 -0.2 961,891 + Psest_0883 0.88 -1.3 961,891 + Psest_0883 0.88 -0.4 961,892 - Psest_0883 0.89 -0.6 961,892 - Psest_0883 0.89 +1.0 961,892 - Psest_0883 0.89 +0.4 961,892 - Psest_0883 0.89 -1.7 961,892 - Psest_0883 0.89 -1.3 961,892 - Psest_0883 0.89 +0.1 961,892 - Psest_0883 0.89 -1.9 961,892 - Psest_0883 0.89 -1.2 961,892 - Psest_0883 0.89 -1.5 961,892 - Psest_0883 0.89 +0.3 961,892 - Psest_0883 0.89 +0.4 961,892 - Psest_0883 0.89 +0.0 961,942 + -1.2 961,943 - +1.7 961,943 - +2.9 961,971 + +0.3 961,971 + -0.2 961,971 + +0.6 961,972 - -0.7 961,972 - -0.4 961,972 - +0.1 961,972 - -1.6 962,173 + Psest_0884 0.49 -1.2 962,173 + Psest_0884 0.49 -0.5 962,173 + Psest_0884 0.49 -1.4 962,173 + Psest_0884 0.49 -0.3 962,173 + Psest_0884 0.49 -0.2 962,173 + Psest_0884 0.49 -1.3 962,173 + Psest_0884 0.49 -0.1 962,174 - Psest_0884 0.49 -0.6 962,174 - Psest_0884 0.49 -0.4 962,174 - Psest_0884 0.49 +0.9 962,174 - Psest_0884 0.49 -0.3 962,174 - Psest_0884 0.49 -1.5 962,174 - Psest_0884 0.49 +0.2 962,174 - Psest_0884 0.49 -0.8 962,244 + Psest_0884 0.63 +0.3 962,245 - Psest_0884 0.63 -1.0 962,288 + Psest_0884 0.72 -0.4 962,288 + Psest_0884 0.72 -1.3 962,289 - Psest_0884 0.72 -1.3 962,309 + Psest_0884 0.76 -1.4 962,309 + Psest_0884 0.76 +0.3 962,309 + Psest_0884 0.76 -1.9 962,362 + Psest_0884 0.87 -0.2 962,401 - -0.9 962,557 + -0.1 962,557 + +0.7 962,557 + +1.4 962,557 + +0.7 962,558 - -1.0 962,558 - -0.8 962,558 - -1.0 962,558 - -1.4 962,558 - -2.0 962,558 - +0.1 962,558 - -0.3 962,558 - +1.0 962,559 + -0.5 962,559 + +1.6 962,566 + -0.5 962,631 + +0.6 962,690 + +0.3 962,690 + +1.2 962,694 + +0.1 962,694 + -0.4 962,694 + +0.4 962,694 + -0.5 962,694 + +0.7 962,694 + +1.4 962,695 - -1.0 962,695 - -0.8 962,695 - +1.0 962,695 - -2.0 962,695 - +0.3 962,695 - -0.5 962,717 + -2.6 962,737 + +0.9 962,738 - -0.4 962,738 - +0.3 962,873 + +0.6 962,874 - +0.4 962,952 + -0.8 962,977 + -0.3 962,977 + -0.1 962,977 + -2.3 962,978 - -0.1 962,978 - +1.3 962,978 - -0.1 963,019 - +2.5 963,019 - +0.0 963,380 + -1.1 963,380 + +1.4 963,380 + +0.6 963,381 - -0.1
Or see this region's nucleotide sequence