Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0884

Experiment: Lactate-nitrite with YE; anaerobic; sample3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0883 and Psest_0884 overlap by 4 nucleotidesPsest_0884 and Psest_0885 are separated by 644 nucleotides Psest_0883: Psest_0883 - hypothetical protein, at 961,602 to 961,928 _0883 Psest_0884: Psest_0884 - Toxin with endonuclease activity YhaV., at 961,925 to 962,428 _0884 Psest_0885: Psest_0885 - Uncharacterized conserved protein, at 963,073 to 963,375 _0885 Position (kb) 961 962 963Strain fitness (log2 ratio) -2 -1 0 1 2 3at 960.949 kb on - strandat 960.991 kb on + strandat 960.991 kb on + strandat 960.992 kb on - strandat 960.992 kb on - strandat 960.992 kb on - strandat 960.992 kb on - strandat 960.992 kb on - strandat 961.039 kb on + strandat 961.161 kb on + strandat 961.161 kb on + strandat 961.161 kb on + strandat 961.343 kb on + strandat 961.393 kb on + strandat 961.393 kb on + strandat 961.393 kb on + strandat 961.393 kb on + strandat 961.393 kb on + strandat 961.393 kb on + strandat 961.393 kb on + strandat 961.393 kb on + strandat 961.393 kb on + strandat 961.393 kb on + strandat 961.393 kb on + strandat 961.393 kb on + strandat 961.393 kb on + strandat 961.393 kb on + strandat 961.393 kb on + strandat 961.393 kb on + strandat 961.393 kb on + strandat 961.393 kb on + strandat 961.393 kb on + strandat 961.393 kb on + strandat 961.393 kb on + strandat 961.393 kb on + strandat 961.394 kb on - strandat 961.394 kb on - strandat 961.394 kb on - strandat 961.394 kb on - strandat 961.394 kb on - strandat 961.394 kb on - strandat 961.394 kb on - strandat 961.394 kb on - strandat 961.394 kb on - strandat 961.394 kb on - strandat 961.394 kb on - strandat 961.394 kb on - strandat 961.394 kb on - strandat 961.394 kb on - strandat 961.394 kb on - strandat 961.394 kb on - strandat 961.394 kb on - strandat 961.394 kb on - strandat 961.421 kb on + strandat 961.422 kb on - strandat 961.422 kb on - strandat 961.458 kb on + strandat 961.458 kb on + strandat 961.458 kb on + strandat 961.458 kb on + strandat 961.458 kb on + strandat 961.458 kb on + strandat 961.458 kb on + strandat 961.458 kb on + strandat 961.458 kb on + strandat 961.458 kb on + strandat 961.459 kb on - strandat 961.459 kb on - strandat 961.459 kb on - strandat 961.459 kb on - strandat 961.459 kb on - strandat 961.459 kb on - strandat 961.459 kb on - strandat 961.459 kb on - strandat 961.459 kb on - strandat 961.459 kb on - strandat 961.459 kb on - strandat 961.459 kb on - strandat 961.459 kb on - strandat 961.459 kb on - strandat 961.491 kb on - strandat 961.514 kb on + strandat 961.515 kb on - strandat 961.553 kb on + strandat 961.553 kb on + strandat 961.554 kb on - strandat 961.554 kb on - strandat 961.688 kb on - strand, within Psest_0883at 961.840 kb on + strand, within Psest_0883at 961.840 kb on + strand, within Psest_0883at 961.840 kb on + strand, within Psest_0883at 961.840 kb on + strand, within Psest_0883at 961.841 kb on - strand, within Psest_0883at 961.889 kb on + strand, within Psest_0883at 961.891 kb on + strand, within Psest_0883at 961.891 kb on + strand, within Psest_0883at 961.891 kb on + strand, within Psest_0883at 961.892 kb on - strand, within Psest_0883at 961.892 kb on - strand, within Psest_0883at 961.892 kb on - strand, within Psest_0883at 961.892 kb on - strand, within Psest_0883at 961.892 kb on - strand, within Psest_0883at 961.892 kb on - strand, within Psest_0883at 961.892 kb on - strand, within Psest_0883at 961.892 kb on - strand, within Psest_0883at 961.892 kb on - strand, within Psest_0883at 961.892 kb on - strand, within Psest_0883at 961.892 kb on - strand, within Psest_0883at 961.892 kb on - strand, within Psest_0883at 961.942 kb on + strandat 961.943 kb on - strandat 961.943 kb on - strandat 961.971 kb on + strandat 961.971 kb on + strandat 961.971 kb on + strandat 961.972 kb on - strandat 961.972 kb on - strandat 961.972 kb on - strandat 961.972 kb on - strandat 962.173 kb on + strand, within Psest_0884at 962.173 kb on + strand, within Psest_0884at 962.173 kb on + strand, within Psest_0884at 962.173 kb on + strand, within Psest_0884at 962.173 kb on + strand, within Psest_0884at 962.173 kb on + strand, within Psest_0884at 962.173 kb on + strand, within Psest_0884at 962.174 kb on - strand, within Psest_0884at 962.174 kb on - strand, within Psest_0884at 962.174 kb on - strand, within Psest_0884at 962.174 kb on - strand, within Psest_0884at 962.174 kb on - strand, within Psest_0884at 962.174 kb on - strand, within Psest_0884at 962.174 kb on - strand, within Psest_0884at 962.244 kb on + strand, within Psest_0884at 962.245 kb on - strand, within Psest_0884at 962.288 kb on + strand, within Psest_0884at 962.288 kb on + strand, within Psest_0884at 962.289 kb on - strand, within Psest_0884at 962.309 kb on + strand, within Psest_0884at 962.309 kb on + strand, within Psest_0884at 962.309 kb on + strand, within Psest_0884at 962.362 kb on + strand, within Psest_0884at 962.401 kb on - strandat 962.557 kb on + strandat 962.557 kb on + strandat 962.557 kb on + strandat 962.557 kb on + strandat 962.558 kb on - strandat 962.558 kb on - strandat 962.558 kb on - strandat 962.558 kb on - strandat 962.558 kb on - strandat 962.558 kb on - strandat 962.558 kb on - strandat 962.558 kb on - strandat 962.559 kb on + strandat 962.559 kb on + strandat 962.566 kb on + strandat 962.631 kb on + strandat 962.690 kb on + strandat 962.690 kb on + strandat 962.694 kb on + strandat 962.694 kb on + strandat 962.694 kb on + strandat 962.694 kb on + strandat 962.694 kb on + strandat 962.694 kb on + strandat 962.695 kb on - strandat 962.695 kb on - strandat 962.695 kb on - strandat 962.695 kb on - strandat 962.695 kb on - strandat 962.695 kb on - strandat 962.717 kb on + strandat 962.737 kb on + strandat 962.738 kb on - strandat 962.738 kb on - strandat 962.873 kb on + strandat 962.874 kb on - strandat 962.952 kb on + strandat 962.977 kb on + strandat 962.977 kb on + strandat 962.977 kb on + strandat 962.978 kb on - strandat 962.978 kb on - strandat 962.978 kb on - strandat 963.019 kb on - strandat 963.019 kb on - strandat 963.380 kb on + strandat 963.380 kb on + strandat 963.380 kb on + strandat 963.381 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-nitrite with YE; anaerobic; sample3
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960,949 - +2.3
960,991 + -0.9
960,991 + -0.6
960,992 - +1.2
960,992 - -0.2
960,992 - +1.4
960,992 - +0.1
960,992 - +0.8
961,039 + +1.1
961,161 + -0.1
961,161 + -0.6
961,161 + -0.5
961,343 + +0.7
961,393 + +0.1
961,393 + -0.5
961,393 + -0.1
961,393 + -0.7
961,393 + -0.2
961,393 + +1.7
961,393 + -1.3
961,393 + -0.3
961,393 + +1.4
961,393 + +0.4
961,393 + +2.3
961,393 + -1.1
961,393 + -0.7
961,393 + -0.0
961,393 + +0.9
961,393 + -0.6
961,393 + -0.4
961,393 + +0.9
961,393 + +0.8
961,393 + +0.3
961,393 + +0.4
961,393 + +0.1
961,394 - -0.2
961,394 - +0.1
961,394 - +1.3
961,394 - +0.3
961,394 - -0.1
961,394 - +0.8
961,394 - +1.3
961,394 - -2.0
961,394 - -2.3
961,394 - +0.9
961,394 - -0.2
961,394 - +1.6
961,394 - +0.6
961,394 - +0.3
961,394 - -0.5
961,394 - +2.3
961,394 - -0.0
961,394 - +0.6
961,421 + +0.1
961,422 - +1.1
961,422 - -0.4
961,458 + -0.6
961,458 + -0.2
961,458 + -0.1
961,458 + +0.3
961,458 + -0.2
961,458 + -0.0
961,458 + +0.3
961,458 + +0.5
961,458 + -0.7
961,458 + -1.3
961,459 - -2.3
961,459 - -0.7
961,459 - -0.4
961,459 - -0.0
961,459 - +0.1
961,459 - +0.3
961,459 - +0.2
961,459 - -1.3
961,459 - +0.5
961,459 - -0.1
961,459 - +0.4
961,459 - -0.9
961,459 - -0.0
961,459 - -0.1
961,491 - -0.7
961,514 + -1.6
961,515 - +0.3
961,553 + -0.6
961,553 + -1.0
961,554 - -1.0
961,554 - -0.9
961,688 - Psest_0883 0.26 +1.0
961,840 + Psest_0883 0.73 -0.1
961,840 + Psest_0883 0.73 +1.7
961,840 + Psest_0883 0.73 -0.3
961,840 + Psest_0883 0.73 -0.3
961,841 - Psest_0883 0.73 -0.3
961,889 + Psest_0883 0.88 -2.5
961,891 + Psest_0883 0.88 -0.2
961,891 + Psest_0883 0.88 -1.3
961,891 + Psest_0883 0.88 -0.4
961,892 - Psest_0883 0.89 -0.6
961,892 - Psest_0883 0.89 +1.0
961,892 - Psest_0883 0.89 +0.4
961,892 - Psest_0883 0.89 -1.7
961,892 - Psest_0883 0.89 -1.3
961,892 - Psest_0883 0.89 +0.1
961,892 - Psest_0883 0.89 -1.9
961,892 - Psest_0883 0.89 -1.2
961,892 - Psest_0883 0.89 -1.5
961,892 - Psest_0883 0.89 +0.3
961,892 - Psest_0883 0.89 +0.4
961,892 - Psest_0883 0.89 +0.0
961,942 + -1.2
961,943 - +1.7
961,943 - +2.9
961,971 + +0.3
961,971 + -0.2
961,971 + +0.6
961,972 - -0.7
961,972 - -0.4
961,972 - +0.1
961,972 - -1.6
962,173 + Psest_0884 0.49 -1.2
962,173 + Psest_0884 0.49 -0.5
962,173 + Psest_0884 0.49 -1.4
962,173 + Psest_0884 0.49 -0.3
962,173 + Psest_0884 0.49 -0.2
962,173 + Psest_0884 0.49 -1.3
962,173 + Psest_0884 0.49 -0.1
962,174 - Psest_0884 0.49 -0.6
962,174 - Psest_0884 0.49 -0.4
962,174 - Psest_0884 0.49 +0.9
962,174 - Psest_0884 0.49 -0.3
962,174 - Psest_0884 0.49 -1.5
962,174 - Psest_0884 0.49 +0.2
962,174 - Psest_0884 0.49 -0.8
962,244 + Psest_0884 0.63 +0.3
962,245 - Psest_0884 0.63 -1.0
962,288 + Psest_0884 0.72 -0.4
962,288 + Psest_0884 0.72 -1.3
962,289 - Psest_0884 0.72 -1.3
962,309 + Psest_0884 0.76 -1.4
962,309 + Psest_0884 0.76 +0.3
962,309 + Psest_0884 0.76 -1.9
962,362 + Psest_0884 0.87 -0.2
962,401 - -0.9
962,557 + -0.1
962,557 + +0.7
962,557 + +1.4
962,557 + +0.7
962,558 - -1.0
962,558 - -0.8
962,558 - -1.0
962,558 - -1.4
962,558 - -2.0
962,558 - +0.1
962,558 - -0.3
962,558 - +1.0
962,559 + -0.5
962,559 + +1.6
962,566 + -0.5
962,631 + +0.6
962,690 + +0.3
962,690 + +1.2
962,694 + +0.1
962,694 + -0.4
962,694 + +0.4
962,694 + -0.5
962,694 + +0.7
962,694 + +1.4
962,695 - -1.0
962,695 - -0.8
962,695 - +1.0
962,695 - -2.0
962,695 - +0.3
962,695 - -0.5
962,717 + -2.6
962,737 + +0.9
962,738 - -0.4
962,738 - +0.3
962,873 + +0.6
962,874 - +0.4
962,952 + -0.8
962,977 + -0.3
962,977 + -0.1
962,977 + -2.3
962,978 - -0.1
962,978 - +1.3
962,978 - -0.1
963,019 - +2.5
963,019 - +0.0
963,380 + -1.1
963,380 + +1.4
963,380 + +0.6
963,381 - -0.1

Or see this region's nucleotide sequence