Experiment: Lactate-nitrite with YE; anaerobic; sample3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0616 and Psest_0618 are separated by 638 nucleotides Psest_0618 and Psest_0619 are separated by 476 nucleotides
Psest_0616: Psest_0616 - heavy metal efflux pump (cobalt-zinc-cadmium), at 666,772 to 669,942
_0616
Psest_0618: Psest_0618 - hypothetical protein, at 670,581 to 670,811
_0618
Psest_0619: Psest_0619 - cation diffusion facilitator family transporter, at 671,288 to 672,208
_0619
Position (kb) 670
671 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 669.588 kb on + strand, within Psest_0616 at 669.588 kb on + strand, within Psest_0616 at 669.588 kb on + strand, within Psest_0616 at 669.589 kb on - strand, within Psest_0616 at 669.589 kb on - strand, within Psest_0616 at 669.589 kb on - strand, within Psest_0616 at 669.614 kb on + strand, within Psest_0616 at 669.614 kb on + strand, within Psest_0616 at 669.614 kb on + strand, within Psest_0616 at 669.665 kb on + strand at 669.788 kb on + strand at 669.788 kb on + strand at 669.788 kb on + strand at 669.788 kb on + strand at 669.788 kb on + strand at 669.788 kb on + strand at 669.789 kb on - strand at 669.789 kb on - strand at 669.789 kb on - strand at 669.842 kb on + strand at 669.849 kb on - strand at 669.851 kb on + strand at 669.851 kb on + strand at 669.851 kb on + strand at 669.852 kb on - strand at 669.852 kb on - strand at 669.940 kb on + strand at 669.940 kb on + strand at 669.940 kb on + strand at 669.941 kb on - strand at 669.978 kb on + strand at 669.979 kb on - strand at 669.979 kb on - strand at 670.073 kb on - strand at 670.073 kb on - strand at 670.103 kb on - strand at 670.109 kb on + strand at 670.109 kb on + strand at 670.121 kb on + strand at 670.125 kb on + strand at 670.125 kb on + strand at 670.125 kb on + strand at 670.125 kb on + strand at 670.125 kb on + strand at 670.125 kb on + strand at 670.125 kb on + strand at 670.125 kb on + strand at 670.125 kb on + strand at 670.126 kb on - strand at 670.126 kb on - strand at 670.126 kb on - strand at 670.175 kb on + strand at 670.176 kb on - strand at 670.225 kb on - strand at 670.390 kb on + strand at 670.421 kb on + strand at 670.421 kb on + strand at 670.435 kb on + strand at 670.436 kb on - strand at 670.436 kb on - strand at 670.437 kb on + strand at 670.437 kb on + strand at 670.437 kb on + strand at 670.794 kb on - strand at 670.811 kb on + strand at 670.937 kb on + strand at 671.080 kb on - strand at 671.226 kb on - strand at 671.308 kb on + strand at 671.419 kb on - strand, within Psest_0619 at 671.431 kb on - strand, within Psest_0619 at 671.435 kb on - strand, within Psest_0619 at 671.435 kb on - strand, within Psest_0619 at 671.480 kb on - strand, within Psest_0619 at 671.585 kb on + strand, within Psest_0619 at 671.594 kb on + strand, within Psest_0619 at 671.594 kb on + strand, within Psest_0619 at 671.602 kb on + strand, within Psest_0619 at 671.604 kb on + strand, within Psest_0619 at 671.604 kb on + strand, within Psest_0619 at 671.604 kb on + strand, within Psest_0619 at 671.604 kb on + strand, within Psest_0619 at 671.677 kb on - strand, within Psest_0619 at 671.677 kb on - strand, within Psest_0619 at 671.677 kb on - strand, within Psest_0619 at 671.714 kb on - strand, within Psest_0619 at 671.720 kb on - strand, within Psest_0619 at 671.728 kb on + strand, within Psest_0619 at 671.728 kb on + strand, within Psest_0619 at 671.786 kb on - strand, within Psest_0619
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrite with YE; anaerobic; sample3 remove 669,588 + Psest_0616 0.89 +1.9 669,588 + Psest_0616 0.89 -1.9 669,588 + Psest_0616 0.89 +0.1 669,589 - Psest_0616 0.89 -0.6 669,589 - Psest_0616 0.89 -1.7 669,589 - Psest_0616 0.89 +0.7 669,614 + Psest_0616 0.90 +0.2 669,614 + Psest_0616 0.90 -2.3 669,614 + Psest_0616 0.90 +0.1 669,665 + -0.0 669,788 + -0.4 669,788 + +1.2 669,788 + -0.3 669,788 + -0.7 669,788 + -0.1 669,788 + -0.7 669,789 - +0.9 669,789 - +1.2 669,789 - -0.4 669,842 + -1.5 669,849 - +0.9 669,851 + -0.1 669,851 + +1.5 669,851 + -0.1 669,852 - +0.2 669,852 - +0.3 669,940 + -1.1 669,940 + +0.8 669,940 + +0.3 669,941 - -0.3 669,978 + -1.0 669,979 - -3.4 669,979 - +1.4 670,073 - +0.5 670,073 - +1.0 670,103 - +0.5 670,109 + -0.5 670,109 + +0.2 670,121 + +1.8 670,125 + +0.6 670,125 + -0.7 670,125 + +0.7 670,125 + -0.3 670,125 + +0.6 670,125 + -1.1 670,125 + -1.2 670,125 + -0.3 670,125 + +0.2 670,126 - -1.2 670,126 - +0.6 670,126 - +1.3 670,175 + -0.1 670,176 - +0.1 670,225 - -0.8 670,390 + +1.7 670,421 + -1.9 670,421 + +1.6 670,435 + +0.8 670,436 - -0.4 670,436 - -0.1 670,437 + -0.0 670,437 + -1.4 670,437 + +1.0 670,794 - +0.1 670,811 + -0.3 670,937 + -0.8 671,080 - +0.3 671,226 - -2.1 671,308 + -1.9 671,419 - Psest_0619 0.14 -0.6 671,431 - Psest_0619 0.16 +0.1 671,435 - Psest_0619 0.16 +0.6 671,435 - Psest_0619 0.16 +0.3 671,480 - Psest_0619 0.21 -1.0 671,585 + Psest_0619 0.32 -0.3 671,594 + Psest_0619 0.33 -0.4 671,594 + Psest_0619 0.33 -0.4 671,602 + Psest_0619 0.34 -0.5 671,604 + Psest_0619 0.34 +0.5 671,604 + Psest_0619 0.34 +2.0 671,604 + Psest_0619 0.34 -0.2 671,604 + Psest_0619 0.34 -0.6 671,677 - Psest_0619 0.42 -0.7 671,677 - Psest_0619 0.42 -0.6 671,677 - Psest_0619 0.42 +0.3 671,714 - Psest_0619 0.46 -2.9 671,720 - Psest_0619 0.47 +0.7 671,728 + Psest_0619 0.48 -0.0 671,728 + Psest_0619 0.48 +0.1 671,786 - Psest_0619 0.54 -0.8
Or see this region's nucleotide sequence