Experiment: Lactate-nitrite with YE; anaerobic; sample3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0606 and Psest_0607 are separated by 86 nucleotides Psest_0607 and Psest_0608 are separated by 92 nucleotides Psest_0608 and Psest_0609 overlap by 4 nucleotides Psest_0609 and Psest_0610 overlap by 90 nucleotides
Psest_0606: Psest_0606 - Predicted hydrolase (HAD superfamily), at 657,339 to 657,971
_0606
Psest_0607: Psest_0607 - Co/Zn/Cd efflux system component, at 658,058 to 658,948
_0607
Psest_0608: Psest_0608 - Cd(II)/Pb(II)-responsive transcriptional regulator, at 659,041 to 659,445
_0608
Psest_0609: Psest_0609 - hypothetical protein, at 659,442 to 659,657
_0609
Psest_0610: Psest_0610 - heavy metal sensor kinase, at 659,568 to 660,941
_0610
Position (kb) 658
659 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 657.081 kb on + strand at 657.081 kb on + strand at 657.081 kb on + strand at 657.081 kb on + strand at 657.081 kb on + strand at 657.210 kb on - strand at 657.343 kb on + strand at 657.343 kb on + strand at 657.343 kb on + strand at 657.343 kb on + strand at 657.343 kb on + strand at 657.344 kb on - strand at 657.344 kb on - strand at 657.344 kb on - strand at 657.344 kb on - strand at 657.352 kb on + strand at 657.353 kb on - strand at 657.386 kb on - strand at 657.510 kb on + strand, within Psest_0606 at 657.511 kb on - strand, within Psest_0606 at 657.541 kb on + strand, within Psest_0606 at 657.541 kb on + strand, within Psest_0606 at 657.541 kb on + strand, within Psest_0606 at 657.541 kb on + strand, within Psest_0606 at 657.541 kb on + strand, within Psest_0606 at 657.542 kb on - strand, within Psest_0606 at 657.542 kb on - strand, within Psest_0606 at 657.545 kb on + strand, within Psest_0606 at 657.694 kb on + strand, within Psest_0606 at 657.715 kb on - strand, within Psest_0606 at 657.715 kb on - strand, within Psest_0606 at 657.743 kb on - strand, within Psest_0606 at 657.743 kb on - strand, within Psest_0606 at 657.762 kb on + strand, within Psest_0606 at 657.763 kb on - strand, within Psest_0606 at 657.763 kb on - strand, within Psest_0606 at 657.837 kb on - strand, within Psest_0606 at 657.877 kb on + strand, within Psest_0606 at 657.877 kb on + strand, within Psest_0606 at 657.877 kb on + strand, within Psest_0606 at 657.877 kb on + strand, within Psest_0606 at 657.877 kb on + strand, within Psest_0606 at 657.877 kb on + strand, within Psest_0606 at 657.877 kb on + strand, within Psest_0606 at 657.878 kb on - strand, within Psest_0606 at 657.878 kb on - strand, within Psest_0606 at 657.878 kb on - strand, within Psest_0606 at 657.878 kb on - strand, within Psest_0606 at 657.878 kb on - strand, within Psest_0606 at 657.878 kb on - strand, within Psest_0606 at 657.878 kb on - strand, within Psest_0606 at 657.878 kb on - strand, within Psest_0606 at 657.949 kb on - strand at 657.989 kb on + strand at 657.989 kb on + strand at 657.990 kb on - strand at 658.002 kb on + strand at 658.017 kb on + strand at 658.017 kb on + strand at 658.017 kb on + strand at 658.017 kb on + strand at 658.018 kb on - strand at 658.018 kb on - strand at 658.138 kb on - strand at 658.138 kb on - strand at 658.175 kb on + strand, within Psest_0607 at 658.175 kb on + strand, within Psest_0607 at 658.215 kb on - strand, within Psest_0607 at 658.215 kb on - strand, within Psest_0607 at 658.215 kb on - strand, within Psest_0607 at 658.317 kb on - strand, within Psest_0607 at 658.343 kb on + strand, within Psest_0607 at 658.344 kb on - strand, within Psest_0607 at 658.344 kb on - strand, within Psest_0607 at 658.345 kb on + strand, within Psest_0607 at 658.345 kb on + strand, within Psest_0607 at 658.345 kb on + strand, within Psest_0607 at 658.345 kb on + strand, within Psest_0607 at 658.345 kb on + strand, within Psest_0607 at 658.346 kb on - strand, within Psest_0607 at 658.346 kb on - strand, within Psest_0607 at 658.346 kb on - strand, within Psest_0607 at 658.346 kb on - strand, within Psest_0607 at 658.346 kb on - strand, within Psest_0607 at 658.346 kb on - strand, within Psest_0607 at 658.346 kb on - strand, within Psest_0607 at 658.346 kb on - strand, within Psest_0607 at 658.364 kb on + strand, within Psest_0607 at 658.365 kb on - strand, within Psest_0607 at 658.453 kb on - strand, within Psest_0607 at 658.453 kb on - strand, within Psest_0607 at 658.467 kb on + strand, within Psest_0607 at 658.575 kb on - strand, within Psest_0607 at 658.580 kb on + strand, within Psest_0607 at 658.581 kb on - strand, within Psest_0607 at 658.581 kb on - strand, within Psest_0607 at 658.586 kb on + strand, within Psest_0607 at 658.586 kb on + strand, within Psest_0607 at 658.586 kb on + strand, within Psest_0607 at 658.586 kb on + strand, within Psest_0607 at 658.587 kb on - strand, within Psest_0607 at 658.606 kb on + strand, within Psest_0607 at 658.606 kb on + strand, within Psest_0607 at 658.606 kb on + strand, within Psest_0607 at 658.607 kb on - strand, within Psest_0607 at 658.739 kb on + strand, within Psest_0607 at 658.740 kb on - strand, within Psest_0607 at 658.849 kb on - strand, within Psest_0607 at 658.892 kb on - strand at 658.984 kb on + strand at 658.984 kb on + strand at 658.984 kb on + strand at 658.984 kb on + strand at 658.985 kb on - strand at 658.985 kb on - strand at 658.985 kb on - strand at 658.985 kb on - strand at 658.985 kb on - strand at 658.995 kb on + strand at 658.995 kb on + strand at 658.995 kb on + strand at 658.995 kb on + strand at 658.995 kb on + strand at 658.995 kb on + strand at 658.995 kb on + strand at 658.995 kb on + strand at 658.995 kb on + strand at 658.995 kb on + strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.996 kb on - strand at 658.999 kb on + strand at 658.999 kb on + strand at 658.999 kb on + strand at 658.999 kb on + strand at 658.999 kb on + strand at 658.999 kb on + strand at 658.999 kb on + strand at 658.999 kb on + strand at 658.999 kb on + strand at 658.999 kb on + strand at 659.000 kb on - strand at 659.000 kb on - strand at 659.000 kb on - strand at 659.000 kb on - strand at 659.000 kb on - strand at 659.000 kb on - strand at 659.000 kb on - strand at 659.000 kb on - strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.002 kb on + strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.003 kb on - strand at 659.004 kb on + strand at 659.004 kb on + strand at 659.004 kb on + strand at 659.004 kb on + strand at 659.004 kb on + strand at 659.004 kb on + strand at 659.004 kb on + strand at 659.004 kb on + strand at 659.004 kb on + strand at 659.005 kb on - strand at 659.005 kb on - strand at 659.058 kb on - strand at 659.066 kb on + strand at 659.066 kb on + strand at 659.067 kb on - strand at 659.067 kb on - strand at 659.069 kb on + strand at 659.069 kb on + strand at 659.070 kb on - strand at 659.070 kb on - strand at 659.079 kb on + strand at 659.079 kb on + strand at 659.079 kb on + strand at 659.079 kb on + strand at 659.079 kb on + strand at 659.080 kb on - strand at 659.080 kb on - strand at 659.080 kb on - strand at 659.098 kb on + strand, within Psest_0608 at 659.098 kb on + strand, within Psest_0608 at 659.098 kb on + strand, within Psest_0608 at 659.099 kb on - strand, within Psest_0608 at 659.099 kb on - strand, within Psest_0608 at 659.099 kb on - strand, within Psest_0608 at 659.155 kb on + strand, within Psest_0608 at 659.181 kb on - strand, within Psest_0608 at 659.245 kb on + strand, within Psest_0608 at 659.271 kb on + strand, within Psest_0608 at 659.271 kb on + strand, within Psest_0608 at 659.271 kb on + strand, within Psest_0608 at 659.271 kb on + strand, within Psest_0608 at 659.272 kb on - strand, within Psest_0608 at 659.272 kb on - strand, within Psest_0608 at 659.371 kb on - strand, within Psest_0608 at 659.439 kb on + strand at 659.439 kb on + strand at 659.439 kb on + strand at 659.439 kb on + strand at 659.439 kb on + strand at 659.439 kb on + strand at 659.439 kb on + strand at 659.439 kb on + strand at 659.533 kb on + strand, within Psest_0609 at 659.533 kb on + strand, within Psest_0609 at 659.697 kb on + strand at 659.697 kb on + strand at 659.697 kb on + strand at 659.698 kb on - strand at 659.698 kb on - strand at 659.698 kb on - strand at 659.698 kb on - strand at 659.698 kb on - strand at 659.698 kb on - strand at 659.793 kb on + strand, within Psest_0610 at 659.793 kb on + strand, within Psest_0610 at 659.793 kb on + strand, within Psest_0610 at 659.793 kb on + strand, within Psest_0610 at 659.794 kb on - strand, within Psest_0610 at 659.794 kb on - strand, within Psest_0610 at 659.794 kb on - strand, within Psest_0610 at 659.794 kb on - strand, within Psest_0610 at 659.794 kb on - strand, within Psest_0610 at 659.794 kb on - strand, within Psest_0610 at 659.813 kb on + strand, within Psest_0610 at 659.813 kb on + strand, within Psest_0610 at 659.813 kb on + strand, within Psest_0610 at 659.813 kb on + strand, within Psest_0610 at 659.813 kb on + strand, within Psest_0610 at 659.813 kb on + strand, within Psest_0610 at 659.814 kb on - strand, within Psest_0610 at 659.814 kb on - strand, within Psest_0610 at 659.814 kb on - strand, within Psest_0610 at 659.814 kb on - strand, within Psest_0610 at 659.814 kb on - strand, within Psest_0610 at 659.814 kb on - strand, within Psest_0610 at 659.814 kb on - strand, within Psest_0610 at 659.814 kb on - strand, within Psest_0610 at 659.814 kb on - strand, within Psest_0610 at 659.814 kb on - strand, within Psest_0610 at 659.825 kb on + strand, within Psest_0610 at 659.835 kb on - strand, within Psest_0610 at 659.835 kb on - strand, within Psest_0610 at 659.888 kb on + strand, within Psest_0610 at 659.888 kb on + strand, within Psest_0610 at 659.888 kb on + strand, within Psest_0610 at 659.889 kb on - strand, within Psest_0610 at 659.889 kb on - strand, within Psest_0610 at 659.889 kb on - strand, within Psest_0610
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrite with YE; anaerobic; sample3 remove 657,081 + -1.8 657,081 + -2.0 657,081 + -0.7 657,081 + -1.5 657,081 + -1.2 657,210 - -1.9 657,343 + +0.6 657,343 + +1.6 657,343 + +0.3 657,343 + -1.4 657,343 + -0.1 657,344 - -1.2 657,344 - +1.3 657,344 - -0.9 657,344 - -0.1 657,352 + -1.1 657,353 - -1.2 657,386 - -0.4 657,510 + Psest_0606 0.27 -0.5 657,511 - Psest_0606 0.27 -0.3 657,541 + Psest_0606 0.32 -0.1 657,541 + Psest_0606 0.32 -1.0 657,541 + Psest_0606 0.32 -0.7 657,541 + Psest_0606 0.32 +0.3 657,541 + Psest_0606 0.32 -0.2 657,542 - Psest_0606 0.32 -1.0 657,542 - Psest_0606 0.32 -1.1 657,545 + Psest_0606 0.33 -1.2 657,694 + Psest_0606 0.56 -0.2 657,715 - Psest_0606 0.59 -0.4 657,715 - Psest_0606 0.59 +2.1 657,743 - Psest_0606 0.64 +0.4 657,743 - Psest_0606 0.64 -2.0 657,762 + Psest_0606 0.67 -0.4 657,763 - Psest_0606 0.67 -1.0 657,763 - Psest_0606 0.67 +0.0 657,837 - Psest_0606 0.79 -1.4 657,877 + Psest_0606 0.85 -0.1 657,877 + Psest_0606 0.85 -0.4 657,877 + Psest_0606 0.85 -0.9 657,877 + Psest_0606 0.85 -0.0 657,877 + Psest_0606 0.85 +0.2 657,877 + Psest_0606 0.85 +0.6 657,877 + Psest_0606 0.85 +0.3 657,878 - Psest_0606 0.85 +0.2 657,878 - Psest_0606 0.85 +0.5 657,878 - Psest_0606 0.85 +0.3 657,878 - Psest_0606 0.85 -0.7 657,878 - Psest_0606 0.85 -1.0 657,878 - Psest_0606 0.85 +0.2 657,878 - Psest_0606 0.85 -0.3 657,878 - Psest_0606 0.85 -0.7 657,949 - -0.6 657,989 + -0.4 657,989 + -2.2 657,990 - +0.5 658,002 + +0.3 658,017 + -0.6 658,017 + -1.0 658,017 + -0.8 658,017 + +0.3 658,018 - +0.9 658,018 - -0.6 658,138 - -0.4 658,138 - +0.1 658,175 + Psest_0607 0.13 +0.2 658,175 + Psest_0607 0.13 +0.3 658,215 - Psest_0607 0.18 +1.3 658,215 - Psest_0607 0.18 -1.1 658,215 - Psest_0607 0.18 -0.4 658,317 - Psest_0607 0.29 -0.5 658,343 + Psest_0607 0.32 +1.6 658,344 - Psest_0607 0.32 -0.6 658,344 - Psest_0607 0.32 -0.4 658,345 + Psest_0607 0.32 -0.5 658,345 + Psest_0607 0.32 -2.7 658,345 + Psest_0607 0.32 -1.4 658,345 + Psest_0607 0.32 -1.2 658,345 + Psest_0607 0.32 -0.5 658,346 - Psest_0607 0.32 +0.0 658,346 - Psest_0607 0.32 -1.0 658,346 - Psest_0607 0.32 -1.2 658,346 - Psest_0607 0.32 -0.2 658,346 - Psest_0607 0.32 +1.3 658,346 - Psest_0607 0.32 +0.3 658,346 - Psest_0607 0.32 -0.9 658,346 - Psest_0607 0.32 -1.0 658,364 + Psest_0607 0.34 -0.7 658,365 - Psest_0607 0.34 +1.7 658,453 - Psest_0607 0.44 +1.7 658,453 - Psest_0607 0.44 -0.6 658,467 + Psest_0607 0.46 -0.3 658,575 - Psest_0607 0.58 -0.6 658,580 + Psest_0607 0.59 -0.2 658,581 - Psest_0607 0.59 +0.3 658,581 - Psest_0607 0.59 +1.6 658,586 + Psest_0607 0.59 -1.1 658,586 + Psest_0607 0.59 +3.0 658,586 + Psest_0607 0.59 -0.4 658,586 + Psest_0607 0.59 +1.9 658,587 - Psest_0607 0.59 +0.6 658,606 + Psest_0607 0.62 +0.2 658,606 + Psest_0607 0.62 -2.1 658,606 + Psest_0607 0.62 +1.9 658,607 - Psest_0607 0.62 -0.8 658,739 + Psest_0607 0.76 -1.7 658,740 - Psest_0607 0.77 +0.2 658,849 - Psest_0607 0.89 -0.4 658,892 - +0.0 658,984 + -0.4 658,984 + -0.8 658,984 + +1.1 658,984 + +0.0 658,985 - +0.1 658,985 - +1.3 658,985 - -2.1 658,985 - +2.3 658,985 - -0.9 658,995 + +0.9 658,995 + +0.2 658,995 + +0.8 658,995 + -0.8 658,995 + -0.7 658,995 + +0.1 658,995 + +2.5 658,995 + -0.4 658,995 + -0.5 658,995 + -1.3 658,996 - -0.8 658,996 - +0.9 658,996 - -0.2 658,996 - +0.3 658,996 - -0.4 658,996 - +1.7 658,996 - -1.4 658,996 - +0.8 658,996 - -0.1 658,996 - +0.9 658,996 - +1.7 658,996 - +0.1 658,996 - +0.2 658,996 - +1.3 658,996 - +1.2 658,999 + +0.6 658,999 + -0.7 658,999 + -0.7 658,999 + -0.6 658,999 + +0.2 658,999 + +0.3 658,999 + -0.7 658,999 + +0.3 658,999 + +0.9 658,999 + -0.9 659,000 - -3.4 659,000 - +0.1 659,000 - -0.0 659,000 - -0.5 659,000 - +0.3 659,000 - -1.2 659,000 - -0.4 659,000 - +1.3 659,002 + -2.0 659,002 + -0.3 659,002 + -1.3 659,002 + -0.0 659,002 + +1.1 659,002 + +0.9 659,002 + -1.4 659,002 + -1.4 659,002 + -0.7 659,002 + -1.4 659,002 + -0.6 659,002 + -0.7 659,003 - +1.7 659,003 - +0.8 659,003 - -1.0 659,003 - -0.9 659,003 - +0.8 659,003 - -0.0 659,003 - +1.1 659,003 - -0.2 659,003 - -0.3 659,003 - +3.5 659,003 - -0.8 659,003 - -2.0 659,003 - +0.1 659,004 + -0.4 659,004 + +0.3 659,004 + -1.2 659,004 + -0.2 659,004 + +0.0 659,004 + -1.4 659,004 + -0.4 659,004 + -0.3 659,004 + -1.1 659,005 - -0.1 659,005 - -0.5 659,058 - -0.8 659,066 + +2.3 659,066 + -0.5 659,067 - -0.2 659,067 - +0.6 659,069 + -0.8 659,069 + +1.0 659,070 - +1.9 659,070 - -1.5 659,079 + +0.3 659,079 + -0.2 659,079 + +0.1 659,079 + -0.4 659,079 + +0.3 659,080 - -0.8 659,080 - +0.1 659,080 - -1.1 659,098 + Psest_0608 0.14 +0.6 659,098 + Psest_0608 0.14 -0.3 659,098 + Psest_0608 0.14 +0.3 659,099 - Psest_0608 0.14 -0.7 659,099 - Psest_0608 0.14 -1.2 659,099 - Psest_0608 0.14 -0.8 659,155 + Psest_0608 0.28 -1.1 659,181 - Psest_0608 0.35 -0.7 659,245 + Psest_0608 0.50 -1.2 659,271 + Psest_0608 0.57 +0.2 659,271 + Psest_0608 0.57 -0.1 659,271 + Psest_0608 0.57 -1.8 659,271 + Psest_0608 0.57 -0.7 659,272 - Psest_0608 0.57 -0.5 659,272 - Psest_0608 0.57 -0.8 659,371 - Psest_0608 0.81 -1.4 659,439 + +1.3 659,439 + -0.4 659,439 + -0.2 659,439 + -0.1 659,439 + +0.1 659,439 + +0.7 659,439 + -0.5 659,439 + +0.3 659,533 + Psest_0609 0.42 -1.1 659,533 + Psest_0609 0.42 -1.3 659,697 + -0.5 659,697 + +1.3 659,697 + -0.7 659,698 - -0.1 659,698 - +0.7 659,698 - +1.3 659,698 - -0.8 659,698 - -1.5 659,698 - -0.9 659,793 + Psest_0610 0.16 -0.2 659,793 + Psest_0610 0.16 -2.1 659,793 + Psest_0610 0.16 -0.5 659,793 + Psest_0610 0.16 -1.3 659,794 - Psest_0610 0.16 -0.1 659,794 - Psest_0610 0.16 +2.1 659,794 - Psest_0610 0.16 -0.7 659,794 - Psest_0610 0.16 -0.5 659,794 - Psest_0610 0.16 -0.2 659,794 - Psest_0610 0.16 -0.3 659,813 + Psest_0610 0.18 -1.0 659,813 + Psest_0610 0.18 -0.7 659,813 + Psest_0610 0.18 -2.6 659,813 + Psest_0610 0.18 +0.6 659,813 + Psest_0610 0.18 -0.9 659,813 + Psest_0610 0.18 -1.7 659,814 - Psest_0610 0.18 -0.6 659,814 - Psest_0610 0.18 -0.8 659,814 - Psest_0610 0.18 -0.4 659,814 - Psest_0610 0.18 -1.4 659,814 - Psest_0610 0.18 +0.5 659,814 - Psest_0610 0.18 -0.4 659,814 - Psest_0610 0.18 -1.0 659,814 - Psest_0610 0.18 +1.6 659,814 - Psest_0610 0.18 -0.4 659,814 - Psest_0610 0.18 -0.7 659,825 + Psest_0610 0.19 -1.2 659,835 - Psest_0610 0.19 -0.0 659,835 - Psest_0610 0.19 -1.2 659,888 + Psest_0610 0.23 +0.4 659,888 + Psest_0610 0.23 -1.0 659,888 + Psest_0610 0.23 -0.5 659,889 - Psest_0610 0.23 +0.8 659,889 - Psest_0610 0.23 +1.8 659,889 - Psest_0610 0.23 +1.5
Or see this region's nucleotide sequence