Experiment: Lactate-nitrite with YE; anaerobic; sample3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0439 and Psest_0440 are separated by 188 nucleotides Psest_0440 and Psest_0441 are separated by 178 nucleotides
Psest_0439: Psest_0439 - hypothetical protein, at 477,613 to 479,055
_0439
Psest_0440: Psest_0440 - hypothetical protein, at 479,244 to 479,558
_0440
Psest_0441: Psest_0441 - Subtilisin-like serine proteases, at 479,737 to 482,166
_0441
Position (kb) 479
480 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 478.301 kb on + strand, within Psest_0439 at 478.302 kb on - strand, within Psest_0439 at 478.302 kb on - strand, within Psest_0439 at 478.302 kb on - strand, within Psest_0439 at 478.320 kb on - strand, within Psest_0439 at 478.320 kb on - strand, within Psest_0439 at 478.398 kb on + strand, within Psest_0439 at 478.399 kb on - strand, within Psest_0439 at 478.544 kb on + strand, within Psest_0439 at 478.544 kb on + strand, within Psest_0439 at 478.544 kb on + strand, within Psest_0439 at 478.544 kb on + strand, within Psest_0439 at 478.544 kb on + strand, within Psest_0439 at 478.646 kb on + strand, within Psest_0439 at 478.646 kb on + strand, within Psest_0439 at 478.646 kb on + strand, within Psest_0439 at 478.646 kb on + strand, within Psest_0439 at 478.646 kb on + strand, within Psest_0439 at 478.647 kb on - strand, within Psest_0439 at 478.647 kb on - strand, within Psest_0439 at 478.647 kb on - strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.649 kb on + strand, within Psest_0439 at 478.650 kb on - strand, within Psest_0439 at 478.650 kb on - strand, within Psest_0439 at 478.650 kb on - strand, within Psest_0439 at 478.650 kb on - strand, within Psest_0439 at 478.650 kb on - strand, within Psest_0439 at 478.650 kb on - strand, within Psest_0439 at 478.650 kb on - strand, within Psest_0439 at 478.650 kb on - strand, within Psest_0439 at 478.650 kb on - strand, within Psest_0439 at 478.650 kb on - strand, within Psest_0439 at 478.650 kb on - strand, within Psest_0439 at 478.650 kb on - strand, within Psest_0439 at 478.703 kb on + strand, within Psest_0439 at 478.703 kb on + strand, within Psest_0439 at 478.704 kb on - strand, within Psest_0439 at 478.704 kb on - strand, within Psest_0439 at 478.708 kb on + strand, within Psest_0439 at 478.708 kb on + strand, within Psest_0439 at 478.727 kb on - strand, within Psest_0439 at 478.917 kb on + strand at 478.918 kb on - strand at 478.918 kb on - strand at 478.969 kb on + strand at 478.969 kb on + strand at 479.043 kb on + strand at 479.043 kb on + strand at 479.044 kb on - strand at 479.044 kb on - strand at 479.044 kb on - strand at 479.053 kb on + strand at 479.053 kb on + strand at 479.053 kb on + strand at 479.053 kb on + strand at 479.053 kb on + strand at 479.053 kb on + strand at 479.053 kb on + strand at 479.053 kb on + strand at 479.053 kb on + strand at 479.053 kb on + strand at 479.053 kb on + strand at 479.054 kb on - strand at 479.054 kb on - strand at 479.054 kb on - strand at 479.054 kb on - strand at 479.058 kb on - strand at 479.086 kb on - strand at 479.147 kb on + strand at 479.147 kb on + strand at 479.147 kb on + strand at 479.162 kb on + strand at 479.162 kb on + strand at 479.163 kb on - strand at 479.163 kb on - strand at 479.192 kb on + strand at 479.192 kb on + strand at 479.193 kb on - strand at 479.224 kb on + strand at 479.224 kb on + strand at 479.225 kb on - strand at 479.225 kb on - strand at 479.258 kb on + strand at 479.259 kb on - strand at 479.437 kb on + strand, within Psest_0440 at 479.437 kb on + strand, within Psest_0440 at 479.437 kb on + strand, within Psest_0440 at 479.437 kb on + strand, within Psest_0440 at 479.438 kb on - strand, within Psest_0440 at 479.438 kb on - strand, within Psest_0440 at 479.556 kb on + strand at 479.556 kb on + strand at 479.556 kb on + strand at 479.557 kb on - strand at 479.557 kb on - strand at 479.557 kb on - strand at 479.557 kb on - strand at 479.557 kb on - strand at 479.603 kb on + strand at 479.603 kb on + strand at 479.604 kb on - strand at 479.658 kb on - strand at 479.690 kb on + strand at 479.691 kb on - strand at 479.691 kb on - strand at 479.691 kb on - strand at 479.711 kb on + strand at 479.712 kb on - strand at 479.712 kb on - strand at 479.712 kb on - strand at 479.731 kb on + strand at 479.860 kb on + strand at 479.860 kb on + strand at 479.860 kb on + strand at 479.860 kb on + strand at 479.860 kb on + strand at 479.861 kb on - strand at 479.861 kb on - strand at 479.879 kb on + strand at 479.880 kb on - strand at 480.082 kb on - strand, within Psest_0441 at 480.129 kb on - strand, within Psest_0441 at 480.150 kb on - strand, within Psest_0441 at 480.150 kb on - strand, within Psest_0441 at 480.150 kb on - strand, within Psest_0441 at 480.231 kb on - strand, within Psest_0441 at 480.301 kb on + strand, within Psest_0441 at 480.302 kb on - strand, within Psest_0441 at 480.302 kb on - strand, within Psest_0441 at 480.302 kb on - strand, within Psest_0441 at 480.343 kb on + strand, within Psest_0441 at 480.344 kb on - strand, within Psest_0441 at 480.394 kb on - strand, within Psest_0441 at 480.405 kb on - strand, within Psest_0441 at 480.438 kb on + strand, within Psest_0441 at 480.439 kb on - strand, within Psest_0441 at 480.455 kb on + strand, within Psest_0441 at 480.455 kb on + strand, within Psest_0441 at 480.455 kb on + strand, within Psest_0441 at 480.456 kb on - strand, within Psest_0441 at 480.486 kb on + strand, within Psest_0441 at 480.486 kb on + strand, within Psest_0441 at 480.486 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.542 kb on + strand, within Psest_0441 at 480.543 kb on - strand, within Psest_0441 at 480.543 kb on - strand, within Psest_0441 at 480.543 kb on - strand, within Psest_0441 at 480.543 kb on - strand, within Psest_0441 at 480.543 kb on - strand, within Psest_0441
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrite with YE; anaerobic; sample3 remove 478,301 + Psest_0439 0.48 -0.1 478,302 - Psest_0439 0.48 -0.4 478,302 - Psest_0439 0.48 -1.4 478,302 - Psest_0439 0.48 +0.8 478,320 - Psest_0439 0.49 +0.6 478,320 - Psest_0439 0.49 +0.6 478,398 + Psest_0439 0.54 -1.2 478,399 - Psest_0439 0.54 -1.4 478,544 + Psest_0439 0.65 +0.8 478,544 + Psest_0439 0.65 -0.3 478,544 + Psest_0439 0.65 -0.5 478,544 + Psest_0439 0.65 -1.0 478,544 + Psest_0439 0.65 +0.2 478,646 + Psest_0439 0.72 +0.6 478,646 + Psest_0439 0.72 +1.3 478,646 + Psest_0439 0.72 -2.6 478,646 + Psest_0439 0.72 -0.6 478,646 + Psest_0439 0.72 +2.1 478,647 - Psest_0439 0.72 +2.6 478,647 - Psest_0439 0.72 +1.1 478,647 - Psest_0439 0.72 +0.0 478,649 + Psest_0439 0.72 -0.1 478,649 + Psest_0439 0.72 -1.7 478,649 + Psest_0439 0.72 -0.4 478,649 + Psest_0439 0.72 +0.1 478,649 + Psest_0439 0.72 -2.3 478,649 + Psest_0439 0.72 -3.0 478,649 + Psest_0439 0.72 +0.6 478,649 + Psest_0439 0.72 -0.1 478,649 + Psest_0439 0.72 -0.7 478,649 + Psest_0439 0.72 -0.7 478,649 + Psest_0439 0.72 +0.2 478,649 + Psest_0439 0.72 -0.8 478,649 + Psest_0439 0.72 +0.2 478,649 + Psest_0439 0.72 -1.4 478,650 - Psest_0439 0.72 -1.0 478,650 - Psest_0439 0.72 +0.4 478,650 - Psest_0439 0.72 -1.7 478,650 - Psest_0439 0.72 +0.7 478,650 - Psest_0439 0.72 +1.2 478,650 - Psest_0439 0.72 -0.6 478,650 - Psest_0439 0.72 -1.2 478,650 - Psest_0439 0.72 +0.2 478,650 - Psest_0439 0.72 +1.7 478,650 - Psest_0439 0.72 -0.6 478,650 - Psest_0439 0.72 -0.0 478,650 - Psest_0439 0.72 -1.0 478,703 + Psest_0439 0.76 +0.0 478,703 + Psest_0439 0.76 +2.5 478,704 - Psest_0439 0.76 +0.0 478,704 - Psest_0439 0.76 -0.4 478,708 + Psest_0439 0.76 -1.6 478,708 + Psest_0439 0.76 -0.2 478,727 - Psest_0439 0.77 -0.6 478,917 + -0.3 478,918 - -0.5 478,918 - +0.4 478,969 + +0.7 478,969 + +0.7 479,043 + -0.4 479,043 + +0.3 479,044 - -0.1 479,044 - +0.8 479,044 - -1.0 479,053 + +0.2 479,053 + +0.1 479,053 + +0.1 479,053 + +1.0 479,053 + -1.4 479,053 + -0.2 479,053 + -1.2 479,053 + -0.3 479,053 + +1.8 479,053 + -1.6 479,053 + +2.8 479,054 - +0.4 479,054 - -1.6 479,054 - -0.6 479,054 - -2.3 479,058 - -0.6 479,086 - +1.1 479,147 + -0.9 479,147 + +0.2 479,147 + -1.6 479,162 + -0.9 479,162 + +0.4 479,163 - +0.1 479,163 - -1.0 479,192 + -2.4 479,192 + +0.0 479,193 - +0.2 479,224 + -0.9 479,224 + -0.4 479,225 - -0.1 479,225 - -0.6 479,258 + +0.7 479,259 - -0.4 479,437 + Psest_0440 0.61 -0.1 479,437 + Psest_0440 0.61 -0.8 479,437 + Psest_0440 0.61 +0.4 479,437 + Psest_0440 0.61 +0.8 479,438 - Psest_0440 0.62 +0.8 479,438 - Psest_0440 0.62 -0.7 479,556 + +1.4 479,556 + -0.3 479,556 + -0.6 479,557 - -3.0 479,557 - +1.5 479,557 - +0.4 479,557 - -1.2 479,557 - -0.9 479,603 + +2.3 479,603 + -0.6 479,604 - -1.0 479,658 - +0.3 479,690 + -1.5 479,691 - -0.5 479,691 - -0.5 479,691 - +0.4 479,711 + +2.2 479,712 - -0.8 479,712 - +1.6 479,712 - +0.7 479,731 + -0.2 479,860 + -1.6 479,860 + +1.7 479,860 + +0.2 479,860 + -0.5 479,860 + -0.3 479,861 - -0.6 479,861 - +0.5 479,879 + -0.9 479,880 - -0.8 480,082 - Psest_0441 0.14 -0.6 480,129 - Psest_0441 0.16 +0.4 480,150 - Psest_0441 0.17 -0.9 480,150 - Psest_0441 0.17 +0.4 480,150 - Psest_0441 0.17 +0.4 480,231 - Psest_0441 0.20 -1.2 480,301 + Psest_0441 0.23 +3.0 480,302 - Psest_0441 0.23 -0.6 480,302 - Psest_0441 0.23 -0.3 480,302 - Psest_0441 0.23 -0.1 480,343 + Psest_0441 0.25 +0.8 480,344 - Psest_0441 0.25 -0.1 480,394 - Psest_0441 0.27 -1.7 480,405 - Psest_0441 0.27 +0.1 480,438 + Psest_0441 0.29 +0.3 480,439 - Psest_0441 0.29 -0.2 480,455 + Psest_0441 0.30 -1.4 480,455 + Psest_0441 0.30 -0.1 480,455 + Psest_0441 0.30 +0.4 480,456 - Psest_0441 0.30 +0.5 480,486 + Psest_0441 0.31 +0.6 480,486 + Psest_0441 0.31 -1.0 480,486 + Psest_0441 0.31 -0.6 480,542 + Psest_0441 0.33 +0.4 480,542 + Psest_0441 0.33 +1.0 480,542 + Psest_0441 0.33 -0.4 480,542 + Psest_0441 0.33 -0.6 480,542 + Psest_0441 0.33 +0.0 480,542 + Psest_0441 0.33 -0.8 480,542 + Psest_0441 0.33 +0.2 480,542 + Psest_0441 0.33 -0.3 480,542 + Psest_0441 0.33 -1.1 480,542 + Psest_0441 0.33 -0.4 480,542 + Psest_0441 0.33 +0.2 480,542 + Psest_0441 0.33 -0.6 480,542 + Psest_0441 0.33 -1.2 480,542 + Psest_0441 0.33 -0.0 480,542 + Psest_0441 0.33 +0.2 480,542 + Psest_0441 0.33 -0.8 480,542 + Psest_0441 0.33 -0.2 480,542 + Psest_0441 0.33 -0.3 480,542 + Psest_0441 0.33 -0.2 480,542 + Psest_0441 0.33 +1.4 480,542 + Psest_0441 0.33 -1.2 480,542 + Psest_0441 0.33 -0.2 480,542 + Psest_0441 0.33 +1.4 480,543 - Psest_0441 0.33 +0.2 480,543 - Psest_0441 0.33 +1.0 480,543 - Psest_0441 0.33 -0.4 480,543 - Psest_0441 0.33 -3.0 480,543 - Psest_0441 0.33 -0.1
Or see this region's nucleotide sequence