Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4038

Experiment: Lactate-nitrite with YE; anaerobic; sample3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Lactate-nitrite with YE; anaerobic; sample3
4,210,208	+				-3.0
4,210,209	-				-1.7
4,210,209	-				-0.3
4,210,209	-				+0.8
4,210,252	+				+0.3
4,210,252	+				-0.8
4,210,252	+				-0.7
4,210,252	+				+0.3
4,210,252	+				-0.7
4,210,252	+				+0.6
4,210,253	-				+0.4
4,210,253	-				-0.4
4,210,253	-				-2.7
4,210,253	-				-0.9
4,210,253	-				+0.1
4,210,253	-				+0.6
4,210,253	-				-0.2
4,210,253	-				+0.0
4,210,253	-				+0.7
4,210,253	-				-0.3
4,210,253	-				+1.6
4,210,253	-				-0.7
4,210,253	-				-0.0
4,210,253	-				-0.0
4,210,253	-				+0.6
4,210,253	-				-2.0
4,210,318	+				-0.2
4,210,318	+				+0.9
4,210,318	+				+0.3
4,210,319	-				+0.6
4,210,360	+				-1.4
4,210,360	+				-0.7
4,210,360	+				-0.7
4,210,361	-				-0.2
4,210,361	-				-0.9
4,210,500	-		Psest_4037	0.16	-0.4
4,210,500	-		Psest_4037	0.16	-1.2
4,210,500	-		Psest_4037	0.16	+1.7
4,210,633	+		Psest_4037	0.38	-2.7
4,210,633	+		Psest_4037	0.38	-0.1
4,210,633	+		Psest_4037	0.38	+2.7
4,210,633	+		Psest_4037	0.38	+0.5
4,210,633	+		Psest_4037	0.38	+0.5
4,210,633	+		Psest_4037	0.38	+0.9
4,210,633	+		Psest_4037	0.38	-0.3
4,210,633	+		Psest_4037	0.38	+1.3
4,210,633	+		Psest_4037	0.38	-1.0
4,210,633	+		Psest_4037	0.38	-1.5
4,210,633	+		Psest_4037	0.38	+1.3
4,210,633	+		Psest_4037	0.38	-0.1
4,210,633	+		Psest_4037	0.38	+0.4
4,210,633	+		Psest_4037	0.38	+0.9
4,210,633	+		Psest_4037	0.38	+0.3
4,210,633	+		Psest_4037	0.38	-0.7
4,210,633	+		Psest_4037	0.38	-0.9
4,210,634	-		Psest_4037	0.38	+2.8
4,210,634	-		Psest_4037	0.38	-0.7
4,210,634	-		Psest_4037	0.38	-0.1
4,210,634	-		Psest_4037	0.38	+0.9
4,210,634	-		Psest_4037	0.38	+0.1
4,210,634	-		Psest_4037	0.38	+0.2
4,210,634	-		Psest_4037	0.38	+0.3
4,210,634	-		Psest_4037	0.38	-0.3
4,210,634	-		Psest_4037	0.38	+0.7
4,210,634	-		Psest_4037	0.38	-0.6
4,210,634	-		Psest_4037	0.38	+0.5
4,210,634	-		Psest_4037	0.38	-0.2
4,210,634	-		Psest_4037	0.38	+1.3
4,210,634	-		Psest_4037	0.38	-0.2
4,210,634	-		Psest_4037	0.38	-1.4
4,210,634	-		Psest_4037	0.38	+0.3
4,210,634	-		Psest_4037	0.38	+0.3
4,210,634	-		Psest_4037	0.38	+0.8
4,210,634	-		Psest_4037	0.38	+0.8
4,210,634	-		Psest_4037	0.38	+0.5
4,210,634	-		Psest_4037	0.38	+0.3
4,210,634	-		Psest_4037	0.38	-1.9
4,210,634	-		Psest_4037	0.38	+2.0
4,210,634	-		Psest_4037	0.38	-1.6
4,210,634	-		Psest_4037	0.38	-0.5
4,210,634	-		Psest_4037	0.38	-0.3
4,210,637	+		Psest_4037	0.38	-0.2
4,210,637	+		Psest_4037	0.38	-0.2
4,210,637	+		Psest_4037	0.38	+0.8
4,210,637	+		Psest_4037	0.38	-0.7
4,210,637	+		Psest_4037	0.38	-0.3
4,210,637	+		Psest_4037	0.38	-0.1
4,210,637	+		Psest_4037	0.38	-0.2
4,210,638	-		Psest_4037	0.38	+1.5
4,210,638	-		Psest_4037	0.38	-0.9
4,210,638	-		Psest_4037	0.38	-0.9
4,210,638	-		Psest_4037	0.38	+0.2
4,210,638	-		Psest_4037	0.38	-0.6
4,210,638	-		Psest_4037	0.38	-0.4
4,210,638	-		Psest_4037	0.38	-0.5
4,210,638	-		Psest_4037	0.38	+0.0
4,210,638	-		Psest_4037	0.38	+0.1
4,210,638	-		Psest_4037	0.38	+0.3
4,210,638	-		Psest_4037	0.38	-1.1
4,210,641	+		Psest_4037	0.39	+0.2
4,210,641	+		Psest_4037	0.39	-0.2
4,210,641	+		Psest_4037	0.39	+2.3
4,210,641	+		Psest_4037	0.39	-0.6
4,210,641	+		Psest_4037	0.39	-0.4
4,210,641	+		Psest_4037	0.39	-0.2
4,210,641	+		Psest_4037	0.39	-1.4
4,210,641	+		Psest_4037	0.39	+0.2
4,210,641	+		Psest_4037	0.39	-0.6
4,210,641	+		Psest_4037	0.39	-0.1
4,210,642	-		Psest_4037	0.39	+0.9
4,210,642	-		Psest_4037	0.39	+0.5
4,210,642	-		Psest_4037	0.39	-1.5
4,210,642	-		Psest_4037	0.39	+0.7
4,210,642	-		Psest_4037	0.39	+0.5
4,210,642	-		Psest_4037	0.39	+0.2
4,210,728	+		Psest_4037	0.53	-0.9
4,210,728	+		Psest_4037	0.53	-1.7
4,210,729	-		Psest_4037	0.53	+0.3
4,210,743	+		Psest_4037	0.55	-0.2
4,210,744	-		Psest_4037	0.56	-1.2
4,210,764	+		Psest_4037	0.59	-0.8
4,210,764	+		Psest_4037	0.59	-1.2
4,210,765	-		Psest_4037	0.59	-0.2
4,210,765	-		Psest_4037	0.59	+1.3
4,210,765	-		Psest_4037	0.59	-0.1
4,210,788	+		Psest_4037	0.63	-0.3
4,210,788	+		Psest_4037	0.63	-1.8
4,210,788	+		Psest_4037	0.63	-0.5
4,210,788	+		Psest_4037	0.63	-2.6
4,210,788	+		Psest_4037	0.63	-0.9
4,210,789	-		Psest_4037	0.63	-0.5
4,210,789	-		Psest_4037	0.63	-2.2
4,210,789	-		Psest_4037	0.63	+0.3
4,210,789	-		Psest_4037	0.63	+0.3
4,210,789	-		Psest_4037	0.63	-0.2
4,210,798	-		Psest_4037	0.64	+0.6
4,210,798	-		Psest_4037	0.64	+0.2
4,210,814	+		Psest_4037	0.67	+0.3
4,210,815	-		Psest_4037	0.67	+0.4
4,210,878	+		Psest_4037	0.77	-0.6
4,210,878	+		Psest_4037	0.77	-1.2
4,210,878	+		Psest_4037	0.77	-0.4
4,210,878	+		Psest_4037	0.77	-0.8
4,210,878	+		Psest_4037	0.77	-1.2
4,210,878	+		Psest_4037	0.77	-2.0
4,210,878	+		Psest_4037	0.77	-1.3
4,210,878	+		Psest_4037	0.77	-0.3
4,210,878	+		Psest_4037	0.77	+0.3
4,210,878	+		Psest_4037	0.77	-1.7
4,210,878	+		Psest_4037	0.77	-0.4
4,210,878	+		Psest_4037	0.77	-0.2
4,210,878	+		Psest_4037	0.77	+0.8
4,210,878	+		Psest_4037	0.77	+0.6
4,210,878	+		Psest_4037	0.77	+0.1
4,210,879	-		Psest_4037	0.77	+0.2
4,210,879	-		Psest_4037	0.77	-1.1
4,210,879	-		Psest_4037	0.77	+1.6
4,210,879	-		Psest_4037	0.77	+0.2
4,210,879	-		Psest_4037	0.77	-0.2
4,210,879	-		Psest_4037	0.77	-1.7
4,210,879	-		Psest_4037	0.77	-1.1
4,210,879	-		Psest_4037	0.77	-0.1
4,210,879	-		Psest_4037	0.77	-2.5
4,210,879	-		Psest_4037	0.77	+0.7
4,210,879	-		Psest_4037	0.77	-0.5
4,210,879	-		Psest_4037	0.77	+1.6
4,210,879	-		Psest_4037	0.77	-0.6
4,210,879	-		Psest_4037	0.77	+0.6
4,210,879	-		Psest_4037	0.77	-1.2
4,210,879	-		Psest_4037	0.77	+2.7
4,210,879	-		Psest_4037	0.77	-0.4
4,210,879	-		Psest_4037	0.77	-0.1
4,211,128	-		Psest_4038	0.19	-0.1
4,211,142	+		Psest_4038	0.22	-1.0
4,211,143	-		Psest_4038	0.22	-0.3
4,211,143	-		Psest_4038	0.22	+1.0
4,211,147	-		Psest_4038	0.23	-0.2
4,211,147	-		Psest_4038	0.23	-1.2
4,211,147	-		Psest_4038	0.23	-1.0
4,211,155	+		Psest_4038	0.24	-0.0
4,211,181	-		Psest_4038	0.30	+0.9
4,211,221	+		Psest_4038	0.38	+0.1
4,211,221	+		Psest_4038	0.38	-1.2
4,211,221	+		Psest_4038	0.38	-0.2
4,211,221	+		Psest_4038	0.38	+1.7
4,211,221	+		Psest_4038	0.38	+0.0
4,211,222	-		Psest_4038	0.39	-0.1
4,211,225	+		Psest_4038	0.39	-0.6
4,211,225	+		Psest_4038	0.39	-1.1
4,211,226	-		Psest_4038	0.40	-0.4
4,211,226	-		Psest_4038	0.40	-1.2
4,211,226	-		Psest_4038	0.40	+0.7
4,211,226	-		Psest_4038	0.40	-0.9
4,211,226	-		Psest_4038	0.40	-1.3
4,211,226	-		Psest_4038	0.40	-1.3
4,211,226	-		Psest_4038	0.40	-1.0
4,211,226	-		Psest_4038	0.40	-0.1
4,211,226	-		Psest_4038	0.40	+1.7
4,211,226	-		Psest_4038	0.40	-1.4
4,211,226	-		Psest_4038	0.40	-0.4
4,211,226	-		Psest_4038	0.40	-0.4
4,211,348	-		Psest_4038	0.66	-3.9
4,211,355	+		Psest_4038	0.67	-0.9
4,211,356	-		Psest_4038	0.67	-0.2
4,211,456	-		Psest_4038	0.89	-0.9
4,211,470	+				-0.0
4,211,470	+				-1.3
4,211,470	+				-0.1
4,211,470	+				-0.4
4,211,470	+				+0.3
4,211,471	-				-0.4
4,211,471	-				+2.9
4,211,471	-				-2.1
4,211,471	-				-1.7
4,211,471	-				-1.7
4,211,471	-				-0.2
4,211,471	-				+0.1
4,211,471	-				-0.2
4,211,473	+				-0.2
4,211,473	+				+0.5
4,211,474	-				+0.2
4,211,474	-				+0.1
4,211,497	+				-0.7
4,211,498	-				-0.1
4,211,498	-				+0.6
4,211,517	-				+0.1
4,211,578	+				-0.7
4,211,578	+				-0.9
4,211,578	+				-0.2
4,211,578	+				-0.9
4,211,578	+				-0.1
4,211,578	+				+0.3
4,211,578	+				-0.3
4,211,579	-				+1.1
4,211,579	-				+1.3
4,211,579	-				-3.0
4,211,579	-				+1.2
4,211,579	-				-0.4
4,211,587	+				-0.1
4,211,587	+				-0.1
4,211,587	+				+0.0
4,211,587	+				-0.3
4,211,588	-				+0.3
4,211,588	-				+0.0
4,211,642	+				-0.1
4,211,642	+				+0.2
4,211,642	+				-1.2
4,211,642	+				+1.0
4,211,642	+				-0.4
4,211,642	+				+0.1
4,211,642	+				-0.4
4,211,642	+				+0.1
4,211,642	+				+0.0
4,211,642	+				-0.4
4,211,642	+				+1.9
4,211,642	+				+0.3
4,211,642	+				-0.2
4,211,642	+				+0.3
4,211,643	-				+0.0
4,211,643	-				-0.1
4,211,643	-				-1.0
4,211,643	-				-1.5
4,211,643	-				+1.6
4,211,643	-				+0.2
4,211,643	-				+1.9
4,211,661	+				-0.7
4,211,662	-				+1.6
4,211,672	+				+0.3
4,211,672	+				-0.3
4,211,672	+				-0.2
4,211,672	+				-0.3
4,211,672	+				-0.1
4,211,673	-				-0.0
4,211,673	-				+1.3
4,211,673	-				-0.4
4,211,673	-				-0.5
4,211,673	-				+0.3
4,211,673	-				+0.1
4,211,673	-				-0.5
4,211,673	-				+1.3
4,211,673	-				+2.7
4,211,681	+				+0.0
4,211,681	+				+2.0
4,211,682	-				+0.8
4,211,682	-				-0.4
4,211,682	-				+1.9
4,211,691	+				+0.5
4,211,692	-				-0.2
4,211,692	-				-0.1
4,211,781	-				-1.7
4,211,782	+				-1.4
4,211,783	-				+0.3
4,211,841	-				-1.2
4,211,867	+				-0.3
4,211,867	+				-0.5
4,211,867	+				-0.9
4,211,874	-				+0.4
4,211,874	-				-0.1
4,211,934	+				-0.8
4,211,934	+				-2.0
4,211,935	-				-1.1
4,211,935	-				+0.3
4,211,951	+				-0.7
4,211,959	+				+1.0
4,211,971	+				+0.7
4,211,972	-				-0.9
4,211,972	-				+0.5
4,212,008	+				-1.4
4,212,008	+				+0.4
4,212,008	+				-1.8
4,212,008	+				-0.5
4,212,008	+				+0.1
4,212,008	+				+0.7
4,212,009	-				-1.1
4,212,009	-				+0.2
4,212,105	+				-0.1
4,212,105	+				+0.8
4,212,106	-				-0.9
4,212,166	+		Psest_4039	0.13	+0.1
4,212,166	+		Psest_4039	0.13	-0.2
4,212,166	+		Psest_4039	0.13	-0.7
4,212,277	+		Psest_4039	0.37	-0.8
4,212,278	-		Psest_4039	0.37	+0.8
4,212,346	+		Psest_4039	0.52	-0.7
4,212,346	+		Psest_4039	0.52	+0.2
4,212,347	-		Psest_4039	0.52	-1.2
4,212,347	-		Psest_4039	0.52	-1.8
4,212,478	+		Psest_4039	0.80	+0.8
4,212,478	+		Psest_4039	0.80	-1.0
4,212,478	+		Psest_4039	0.80	+0.3
4,212,478	+		Psest_4039	0.80	-0.5
4,212,478	+		Psest_4039	0.80	+0.8
4,212,478	+		Psest_4039	0.80	+0.1
4,212,479	-		Psest_4039	0.81	+0.1