Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3430

Experiment: Lactate-nitrite with YE; anaerobic; sample3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Lactate-nitrite with YE; anaerobic; sample3
3,596,043	+				-1.7
3,596,043	+				-0.0
3,596,043	+				+0.5
3,596,044	-				-1.6
3,596,044	-				-1.6
3,596,044	-				+0.6
3,596,044	-				-0.0
3,596,047	+				-0.5
3,596,047	+				-0.9
3,596,047	+				+0.2
3,596,047	+				-0.6
3,596,047	+				-1.2
3,596,047	+				+0.0
3,596,047	+				+0.2
3,596,047	+				-1.0
3,596,047	+				+2.4
3,596,047	+				-2.4
3,596,047	+				+0.1
3,596,048	-				-2.6
3,596,048	-				-2.3
3,596,048	-				-2.1
3,596,048	-				+1.6
3,596,048	-				-1.3
3,596,048	-				+0.4
3,596,086	-				-0.3
3,596,086	-				-2.1
3,596,125	-				-0.7
3,596,125	-				-0.4
3,596,125	-				-0.8
3,596,125	-				+0.2
3,596,125	-				-0.9
3,596,125	-				+1.1
3,596,142	-				-0.7
3,596,213	-				-0.6
3,596,247	+				+0.2
3,596,257	+				+0.2
3,596,258	-				-1.8
3,596,286	+				-0.1
3,596,286	+				-1.3
3,596,287	-				-1.0
3,596,424	+		Psest_3429	0.25	-1.8
3,596,424	+		Psest_3429	0.25	-0.7
3,596,424	+		Psest_3429	0.25	+0.7
3,596,425	-		Psest_3429	0.26	+0.2
3,596,425	-		Psest_3429	0.26	-0.2
3,596,425	-		Psest_3429	0.26	+1.6
3,596,425	-		Psest_3429	0.26	-1.0
3,596,425	-		Psest_3429	0.26	+0.4
3,596,425	-		Psest_3429	0.26	-0.4
3,596,440	+		Psest_3429	0.29	-0.9
3,596,440	+		Psest_3429	0.29	+0.2
3,596,440	+		Psest_3429	0.29	-0.3
3,596,441	-		Psest_3429	0.30	+0.2
3,596,575	+		Psest_3429	0.63	+0.3
3,596,576	-		Psest_3429	0.63	+0.2
3,596,576	-		Psest_3429	0.63	-1.4
3,596,576	-		Psest_3429	0.63	+0.2
3,596,576	-		Psest_3429	0.63	-0.7
3,596,682	+				+2.6
3,596,688	+				-0.1
3,596,689	-				-0.1
3,596,933	+				-0.6
3,596,933	+				-0.6
3,596,934	-				-0.1
3,596,934	-				-1.0
3,596,934	-				+0.0
3,596,934	-				+2.2
3,596,934	-				+0.8
3,596,934	-				+0.4
3,596,934	-				-0.3
3,596,934	-				-0.5
3,596,934	-				+0.6
3,596,934	-				-1.4
3,596,936	-				-3.0
3,596,936	-				-1.4
3,596,936	-				-1.6
3,596,936	-				-1.8
3,596,936	-				+0.2
3,596,936	-				+0.4
3,597,023	+		Psest_3430	0.13	-1.1
3,597,024	-		Psest_3430	0.13	-1.0
3,597,131	-		Psest_3430	0.18	+0.4
3,597,207	+		Psest_3430	0.22	+0.3
3,597,207	+		Psest_3430	0.22	-1.2
3,597,275	+		Psest_3430	0.25	+0.6
3,597,275	+		Psest_3430	0.25	-0.8
3,597,275	+		Psest_3430	0.25	+0.2
3,597,334	+		Psest_3430	0.27	-1.0
3,597,334	+		Psest_3430	0.27	-1.4
3,597,354	-		Psest_3430	0.28	+0.9
3,597,354	-		Psest_3430	0.28	-2.5
3,597,476	+		Psest_3430	0.34	+0.5
3,597,476	+		Psest_3430	0.34	-0.6
3,597,476	+		Psest_3430	0.34	-1.3
3,597,476	+		Psest_3430	0.34	+0.4
3,597,476	+		Psest_3430	0.34	-2.8
3,597,476	+		Psest_3430	0.34	-1.4
3,597,483	-		Psest_3430	0.34	-1.5
3,597,486	-		Psest_3430	0.34	-1.1
3,597,639	-		Psest_3430	0.41	-0.6
3,597,649	+		Psest_3430	0.41	+0.2
3,597,683	-		Psest_3430	0.43	+1.5
3,597,683	-		Psest_3430	0.43	-1.4
3,597,775	+		Psest_3430	0.47	-0.4
3,597,775	+		Psest_3430	0.47	-0.6
3,597,775	+		Psest_3430	0.47	-0.4
3,597,775	+		Psest_3430	0.47	+0.3
3,597,775	+		Psest_3430	0.47	+1.6
3,597,775	+		Psest_3430	0.47	-0.7
3,597,775	+		Psest_3430	0.47	+1.3
3,597,775	+		Psest_3430	0.47	+0.2
3,597,775	+		Psest_3430	0.47	+0.1
3,597,775	+		Psest_3430	0.47	-0.5
3,597,775	+		Psest_3430	0.47	-0.8
3,597,775	+		Psest_3430	0.47	+0.1
3,597,775	+		Psest_3430	0.47	-0.5
3,597,775	+		Psest_3430	0.47	+1.2
3,597,775	+		Psest_3430	0.47	-0.3
3,597,775	+		Psest_3430	0.47	-1.0
3,597,775	+		Psest_3430	0.47	-0.4
3,597,775	+		Psest_3430	0.47	-1.0
3,597,775	+		Psest_3430	0.47	+1.2
3,597,775	+		Psest_3430	0.47	-0.0
3,597,775	+		Psest_3430	0.47	-0.9
3,597,775	+		Psest_3430	0.47	-0.3
3,597,775	+		Psest_3430	0.47	-1.0
3,597,775	+		Psest_3430	0.47	-0.4
3,597,775	+		Psest_3430	0.47	-0.0
3,597,776	-		Psest_3430	0.47	-2.0
3,597,776	-		Psest_3430	0.47	+1.2
3,597,776	-		Psest_3430	0.47	-1.3
3,597,776	-		Psest_3430	0.47	-0.2
3,597,776	-		Psest_3430	0.47	-0.6
3,597,776	-		Psest_3430	0.47	-1.6
3,597,776	-		Psest_3430	0.47	+0.2
3,597,776	-		Psest_3430	0.47	-0.3
3,597,776	-		Psest_3430	0.47	-1.3
3,597,776	-		Psest_3430	0.47	-1.0
3,597,776	-		Psest_3430	0.47	-0.0
3,597,776	-		Psest_3430	0.47	-0.4
3,597,776	-		Psest_3430	0.47	-1.1
3,597,776	-		Psest_3430	0.47	+0.9
3,597,776	-		Psest_3430	0.47	+0.9
3,597,776	-		Psest_3430	0.47	-0.0
3,597,776	-		Psest_3430	0.47	+1.9
3,597,776	-		Psest_3430	0.47	-0.6
3,597,777	+		Psest_3430	0.47	-0.2
3,597,777	+		Psest_3430	0.47	+0.2
3,597,777	+		Psest_3430	0.47	-0.4
3,597,777	+		Psest_3430	0.47	-0.3
3,597,777	+		Psest_3430	0.47	-1.1
3,597,777	+		Psest_3430	0.47	-0.4
3,597,777	+		Psest_3430	0.47	-1.2
3,597,777	+		Psest_3430	0.47	-1.4
3,597,777	+		Psest_3430	0.47	+1.7
3,597,777	+		Psest_3430	0.47	-0.1
3,597,777	+		Psest_3430	0.47	-0.6
3,597,777	+		Psest_3430	0.47	-0.1
3,597,777	+		Psest_3430	0.47	-0.6
3,597,777	+		Psest_3430	0.47	-3.0
3,597,777	+		Psest_3430	0.47	-0.5
3,597,778	-		Psest_3430	0.47	-1.8
3,597,778	-		Psest_3430	0.47	-1.3
3,597,778	-		Psest_3430	0.47	+0.0
3,597,778	-		Psest_3430	0.47	-2.0
3,597,778	-		Psest_3430	0.47	+0.2
3,597,778	-		Psest_3430	0.47	+0.2
3,597,778	-		Psest_3430	0.47	-0.2
3,597,778	-		Psest_3430	0.47	-0.2
3,597,778	-		Psest_3430	0.47	-0.1
3,597,778	-		Psest_3430	0.47	+1.2
3,597,778	-		Psest_3430	0.47	+2.2
3,597,778	-		Psest_3430	0.47	-0.6
3,597,881	+		Psest_3430	0.52	-0.1
3,597,882	-		Psest_3430	0.52	+0.2
3,597,882	-		Psest_3430	0.52	-1.4
3,597,891	+		Psest_3430	0.52	+0.7
3,597,891	+		Psest_3430	0.52	-0.4
3,597,977	+		Psest_3430	0.56	-0.5
3,597,977	+		Psest_3430	0.56	+0.0
3,597,977	+		Psest_3430	0.56	-0.6
3,598,023	+		Psest_3430	0.58	-2.2
3,598,073	+		Psest_3430	0.60	-1.3
3,598,073	+		Psest_3430	0.60	+0.5
3,598,073	+		Psest_3430	0.60	-0.5
3,598,073	+		Psest_3430	0.60	+1.1
3,598,073	+		Psest_3430	0.60	-0.1
3,598,073	+		Psest_3430	0.60	+0.0
3,598,074	-		Psest_3430	0.60	-1.4
3,598,074	-		Psest_3430	0.60	+0.8
3,598,074	-		Psest_3430	0.60	-0.0
3,598,074	-		Psest_3430	0.60	-0.7
3,598,193	+		Psest_3430	0.66	-0.2
3,598,194	-		Psest_3430	0.66	-0.4
3,598,194	-		Psest_3430	0.66	+0.6
3,598,197	+		Psest_3430	0.66	-1.6
3,598,197	+		Psest_3430	0.66	-0.8
3,598,400	+		Psest_3430	0.75	-1.4
3,598,400	+		Psest_3430	0.75	-0.1
3,598,401	-		Psest_3430	0.75	-0.8
3,598,401	-		Psest_3430	0.75	+0.4
3,598,401	-		Psest_3430	0.75	-0.2
3,598,484	+		Psest_3430	0.79	-1.4
3,598,484	+		Psest_3430	0.79	-1.8
3,598,485	-		Psest_3430	0.79	-0.4
3,598,485	-		Psest_3430	0.79	+0.1
3,598,485	-		Psest_3430	0.79	+0.3
3,598,485	-		Psest_3430	0.79	-0.1
3,598,489	+		Psest_3430	0.79	+1.8
3,598,489	+		Psest_3430	0.79	-4.0
3,598,489	+		Psest_3430	0.79	+1.5
3,598,489	+		Psest_3430	0.79	-2.4
3,598,489	+		Psest_3430	0.79	-1.2
3,598,489	+		Psest_3430	0.79	-0.5
3,598,489	+		Psest_3430	0.79	-0.8
3,598,489	+		Psest_3430	0.79	-0.2
3,598,490	-		Psest_3430	0.79	-1.2
3,598,490	-		Psest_3430	0.79	+0.6
3,598,495	+		Psest_3430	0.79	-0.9
3,598,495	+		Psest_3430	0.79	+0.4
3,598,496	-		Psest_3430	0.79	+0.9
3,598,496	-		Psest_3430	0.79	-0.9
3,598,496	-		Psest_3430	0.79	-0.2
3,598,496	-		Psest_3430	0.79	-0.4
3,598,496	-		Psest_3430	0.79	-0.4
3,598,531	+		Psest_3430	0.81	+0.3
3,598,532	-		Psest_3430	0.81	+0.3
3,598,532	-		Psest_3430	0.81	-0.4
3,598,532	-		Psest_3430	0.81	+0.2
3,598,545	-		Psest_3430	0.82	-1.5
3,598,600	-		Psest_3430	0.84	-0.0
3,598,660	+		Psest_3430	0.87	-0.1
3,598,660	+		Psest_3430	0.87	-0.7
3,598,660	+		Psest_3430	0.87	+0.2
3,598,660	+		Psest_3430	0.87	+0.4
3,598,661	-		Psest_3430	0.87	-0.0
3,598,661	-		Psest_3430	0.87	-0.6
3,598,661	-		Psest_3430	0.87	-0.7
3,598,661	-		Psest_3430	0.87	-2.1
3,598,661	-		Psest_3430	0.87	-0.8
3,598,661	-		Psest_3430	0.87	+0.6
3,598,661	-		Psest_3430	0.87	-1.1
3,598,661	-		Psest_3430	0.87	-1.5
3,598,733	+				-1.2
3,598,733	+				+1.4
3,598,733	+				+0.5
3,598,734	-				-0.4
3,598,734	-				+0.2
3,598,734	-				+0.5
3,598,734	-				+0.0
3,598,734	-				+1.7
3,598,734	-				+1.0
3,598,791	-				-0.4
3,598,805	+				-0.4
3,598,806	-				-0.1
3,598,907	+				-1.5
3,599,146	-		Psest_3431	0.12	+0.5
3,599,154	+		Psest_3431	0.13	-0.5
3,599,155	-		Psest_3431	0.13	-1.9
3,599,155	-		Psest_3431	0.13	-2.9
3,599,245	+		Psest_3431	0.18	+0.6
3,599,245	+		Psest_3431	0.18	+0.5
3,599,245	+		Psest_3431	0.18	-3.1
3,599,245	+		Psest_3431	0.18	-0.1
3,599,245	+		Psest_3431	0.18	-1.7
3,599,246	-		Psest_3431	0.19	-0.5
3,599,339	+		Psest_3431	0.24	+0.9
3,599,350	-		Psest_3431	0.25	+0.2
3,599,440	+		Psest_3431	0.31	-0.0
3,599,440	+		Psest_3431	0.31	-0.1
3,599,440	+		Psest_3431	0.31	+0.4
3,599,441	-		Psest_3431	0.31	+0.5
3,599,441	-		Psest_3431	0.31	-0.8
3,599,441	-		Psest_3431	0.31	+0.9
3,599,441	-		Psest_3431	0.31	-1.3
3,599,441	-		Psest_3431	0.31	-0.9
3,599,441	-		Psest_3431	0.31	-0.9
3,599,744	+		Psest_3431	0.50	-0.1
3,599,744	+		Psest_3431	0.50	-0.6
3,599,745	-		Psest_3431	0.50	+0.2
3,599,745	-		Psest_3431	0.50	+1.8
3,599,745	-		Psest_3431	0.50	-0.8
3,599,745	-		Psest_3431	0.50	+0.7
3,599,745	-		Psest_3431	0.50	-0.6
3,599,754	+		Psest_3431	0.51	-0.8
3,599,754	+		Psest_3431	0.51	-0.5
3,599,772	+		Psest_3431	0.52	-0.3
3,599,772	+		Psest_3431	0.52	-1.0
3,599,772	+		Psest_3431	0.52	+0.9
3,599,773	-		Psest_3431	0.52	-0.6
3,599,773	-		Psest_3431	0.52	-0.2
3,599,773	-		Psest_3431	0.52	-2.0
3,599,773	-		Psest_3431	0.52	-1.2
3,599,773	-		Psest_3431	0.52	-1.0
3,599,773	-		Psest_3431	0.52	+0.8
3,599,773	-		Psest_3431	0.52	-0.3
3,599,773	-		Psest_3431	0.52	-2.1
3,599,939	+		Psest_3431	0.62	-0.1
3,599,940	-		Psest_3431	0.62	-1.0
3,599,950	-		Psest_3431	0.63	+0.4
3,599,955	+		Psest_3431	0.63	-1.2