Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2690

Experiment: Lactate-nitrite with YE; anaerobic; sample3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Lactate-nitrite with YE; anaerobic; sample3
2,878,768	+				-1.5
2,878,832	+				-0.5
2,878,832	+				-0.5
2,878,832	+				-0.1
2,878,833	-				+0.4
2,878,833	-				+0.2
2,878,833	-				-0.6
2,878,833	-				-0.5
2,878,833	-				+0.2
2,878,833	-				+0.2
2,878,833	-				+1.0
2,878,879	+				-0.8
2,878,880	-				-1.8
2,878,880	-				+0.4
2,878,880	-				+0.0
2,878,882	-				-0.2
2,878,882	-				-0.3
2,878,882	-				+0.1
2,878,882	-				+0.6
2,878,958	+				+1.1
2,878,958	+				-1.4
2,878,958	+				-0.2
2,878,958	+				-1.0
2,878,958	+				-0.5
2,878,959	-				-0.3
2,878,959	-				+0.2
2,878,959	-				-0.8
2,878,959	-				-0.3
2,878,959	-				+0.5
2,878,959	-				+0.1
2,878,988	-		Psest_2690	0.10	-0.9
2,878,988	-		Psest_2690	0.10	-0.6
2,878,990	-		Psest_2690	0.10	-0.7
2,879,064	+		Psest_2690	0.16	-0.3
2,879,064	+		Psest_2690	0.16	-0.4
2,879,065	-		Psest_2690	0.16	-0.7
2,879,065	-		Psest_2690	0.16	+0.3
2,879,113	-		Psest_2690	0.20	-2.0
2,879,119	-		Psest_2690	0.20	-0.1
2,879,160	+		Psest_2690	0.24	+0.4
2,879,160	+		Psest_2690	0.24	+0.1
2,879,160	+		Psest_2690	0.24	-1.2
2,879,160	+		Psest_2690	0.24	-0.3
2,879,161	-		Psest_2690	0.24	-0.4
2,879,161	-		Psest_2690	0.24	-0.3
2,879,161	-		Psest_2690	0.24	+0.7
2,879,161	-		Psest_2690	0.24	+0.3
2,879,190	-		Psest_2690	0.26	-0.4
2,879,226	+		Psest_2690	0.29	-1.5
2,879,247	+		Psest_2690	0.31	-0.9
2,879,248	-		Psest_2690	0.31	+2.2
2,879,248	-		Psest_2690	0.31	+0.4
2,879,248	-		Psest_2690	0.31	-1.1
2,879,343	+		Psest_2690	0.38	-2.3
2,879,343	+		Psest_2690	0.38	-1.0
2,879,343	+		Psest_2690	0.38	-0.3
2,879,344	-		Psest_2690	0.38	-0.6
2,879,344	-		Psest_2690	0.38	-0.8
2,879,344	-		Psest_2690	0.38	-1.5
2,879,344	-		Psest_2690	0.38	-0.1
2,879,390	-		Psest_2690	0.42	-0.2
2,879,396	+		Psest_2690	0.42	+0.0
2,879,396	+		Psest_2690	0.42	+1.6
2,879,396	+		Psest_2690	0.42	+1.7
2,879,418	+		Psest_2690	0.44	-0.6
2,879,418	+		Psest_2690	0.44	+0.1
2,879,418	+		Psest_2690	0.44	-0.8
2,879,418	+		Psest_2690	0.44	-0.1
2,879,418	+		Psest_2690	0.44	-0.2
2,879,418	+		Psest_2690	0.44	-0.7
2,879,418	+		Psest_2690	0.44	+0.2
2,879,418	+		Psest_2690	0.44	-1.7
2,879,418	+		Psest_2690	0.44	-0.5
2,879,418	+		Psest_2690	0.44	+0.3
2,879,418	+		Psest_2690	0.44	-1.5
2,879,418	+		Psest_2690	0.44	-0.9
2,879,418	+		Psest_2690	0.44	-0.7
2,879,418	+		Psest_2690	0.44	+0.1
2,879,418	+		Psest_2690	0.44	-1.0
2,879,419	-		Psest_2690	0.44	-0.1
2,879,419	-		Psest_2690	0.44	+2.1
2,879,419	-		Psest_2690	0.44	-0.5
2,879,419	-		Psest_2690	0.44	+0.1
2,879,419	-		Psest_2690	0.44	+0.2
2,879,419	-		Psest_2690	0.44	-1.2
2,879,419	-		Psest_2690	0.44	+0.2
2,879,419	-		Psest_2690	0.44	-0.2
2,879,419	-		Psest_2690	0.44	-0.3
2,879,419	-		Psest_2690	0.44	-1.3
2,879,419	-		Psest_2690	0.44	-1.6
2,879,419	-		Psest_2690	0.44	+0.9
2,879,419	-		Psest_2690	0.44	-0.7
2,879,419	-		Psest_2690	0.44	-0.2
2,879,419	-		Psest_2690	0.44	+0.3
2,879,419	-		Psest_2690	0.44	-1.1
2,879,419	-		Psest_2690	0.44	+1.4
2,879,419	-		Psest_2690	0.44	+0.1
2,879,419	-		Psest_2690	0.44	-2.2
2,879,419	-		Psest_2690	0.44	-0.7
2,879,419	-		Psest_2690	0.44	-1.0
2,879,419	-		Psest_2690	0.44	+0.3
2,879,419	-		Psest_2690	0.44	+1.2
2,879,419	-		Psest_2690	0.44	+0.4
2,879,419	-		Psest_2690	0.44	-1.6
2,879,479	-		Psest_2690	0.49	-0.2
2,879,493	+		Psest_2690	0.50	-0.7
2,879,493	+		Psest_2690	0.50	+0.7
2,879,493	+		Psest_2690	0.50	+0.0
2,879,493	+		Psest_2690	0.50	-0.5
2,879,493	+		Psest_2690	0.50	-0.4
2,879,493	+		Psest_2690	0.50	+2.3
2,879,493	+		Psest_2690	0.50	-0.5
2,879,493	+		Psest_2690	0.50	-0.2
2,879,493	+		Psest_2690	0.50	-1.2
2,879,494	-		Psest_2690	0.50	-0.5
2,879,494	-		Psest_2690	0.50	-0.3
2,879,494	-		Psest_2690	0.50	-0.2
2,879,494	-		Psest_2690	0.50	-0.6
2,879,494	-		Psest_2690	0.50	+0.2
2,879,494	-		Psest_2690	0.50	+0.1
2,879,494	-		Psest_2690	0.50	+0.7
2,879,528	-		Psest_2690	0.53	-0.3
2,879,649	+		Psest_2690	0.62	-0.3
2,879,649	+		Psest_2690	0.62	-0.3
2,879,650	-		Psest_2690	0.63	+0.2
2,879,661	-		Psest_2690	0.63	-0.4
2,879,769	+		Psest_2690	0.72	-0.4
2,879,898	+		Psest_2690	0.82	-1.5
2,879,914	+		Psest_2690	0.83	-0.2
2,879,914	+		Psest_2690	0.83	-0.2
2,879,914	+		Psest_2690	0.83	+0.7
2,879,914	+		Psest_2690	0.83	+0.5
2,879,914	+		Psest_2690	0.83	+1.9
2,879,914	+		Psest_2690	0.83	+0.1
2,879,914	+		Psest_2690	0.83	-0.2
2,879,915	-		Psest_2690	0.84	-0.1
2,879,915	-		Psest_2690	0.84	+0.4
2,879,915	-		Psest_2690	0.84	-0.7
2,879,918	+		Psest_2690	0.84	-0.6
2,879,919	-		Psest_2690	0.84	+0.1
2,879,919	-		Psest_2690	0.84	-0.1
2,879,919	-		Psest_2690	0.84	-0.9
2,879,919	-		Psest_2690	0.84	-2.2
2,879,919	-		Psest_2690	0.84	-0.4
2,879,919	-		Psest_2690	0.84	-0.5
2,879,966	+		Psest_2690	0.88	-0.7
2,879,994	+		Psest_2690	0.90	-0.7
2,879,994	+		Psest_2690	0.90	-0.1
2,879,997	+				-0.2
2,879,997	+				+1.3
2,880,001	+				+1.4
2,880,001	+				-0.1
2,880,001	+				-0.2
2,880,001	+				+0.1
2,880,001	+				+0.5
2,880,001	+				-0.3
2,880,001	+				+1.1
2,880,002	-				-0.9
2,880,109	+				+1.6
2,880,109	+				+1.6
2,880,109	+				-0.2
2,880,109	+				+0.4
2,880,109	+				-0.8
2,880,110	-				-0.3
2,880,110	-				+1.1
2,880,110	-				+0.2
2,880,288	-				+0.1
2,880,376	+		Psest_2691	0.12	-1.0
2,880,376	+		Psest_2691	0.12	-0.6
2,880,376	+		Psest_2691	0.12	-0.7
2,880,376	+		Psest_2691	0.12	-1.0
2,880,376	+		Psest_2691	0.12	+1.0
2,880,377	-		Psest_2691	0.12	-1.4
2,880,377	-		Psest_2691	0.12	+0.9
2,880,377	-		Psest_2691	0.12	+0.9
2,880,377	-		Psest_2691	0.12	+0.7
2,880,377	-		Psest_2691	0.12	-0.4
2,880,377	-		Psest_2691	0.12	+0.1
2,880,521	+		Psest_2691	0.24	+0.1
2,880,521	+		Psest_2691	0.24	-0.8
2,880,521	+		Psest_2691	0.24	+0.4
2,880,522	-		Psest_2691	0.24	+0.2
2,880,522	-		Psest_2691	0.24	-0.3
2,880,533	+		Psest_2691	0.25	-0.9
2,880,533	+		Psest_2691	0.25	-2.9
2,880,533	+		Psest_2691	0.25	-0.4
2,880,533	+		Psest_2691	0.25	-0.4
2,880,533	+		Psest_2691	0.25	+0.1
2,880,533	+		Psest_2691	0.25	+0.7
2,880,533	+		Psest_2691	0.25	-1.0
2,880,534	-		Psest_2691	0.25	+0.5
2,880,534	-		Psest_2691	0.25	+0.0
2,880,534	-		Psest_2691	0.25	-1.2
2,880,534	-		Psest_2691	0.25	-0.3
2,880,534	-		Psest_2691	0.25	-0.9
2,880,534	-		Psest_2691	0.25	-1.8
2,880,534	-		Psest_2691	0.25	+0.0
2,880,537	+		Psest_2691	0.25	+0.1
2,880,537	+		Psest_2691	0.25	-0.6
2,880,537	+		Psest_2691	0.25	-0.0
2,880,537	+		Psest_2691	0.25	+0.1
2,880,537	+		Psest_2691	0.25	-0.3
2,880,537	+		Psest_2691	0.25	+0.7
2,880,538	-		Psest_2691	0.26	+1.9
2,880,538	-		Psest_2691	0.26	-0.2
2,880,629	+		Psest_2691	0.33	-0.7
2,880,630	-		Psest_2691	0.33	-0.4
2,880,630	-		Psest_2691	0.33	-1.3
2,880,630	-		Psest_2691	0.33	-0.1
2,880,683	-		Psest_2691	0.38	+0.5
2,880,683	-		Psest_2691	0.38	+0.8
2,880,791	-		Psest_2691	0.47	+0.3
2,880,957	+		Psest_2691	0.60	+0.9
2,880,957	+		Psest_2691	0.60	+0.6
2,880,957	+		Psest_2691	0.60	-0.1
2,880,958	-		Psest_2691	0.60	-0.4
2,880,958	-		Psest_2691	0.60	-0.1
2,880,958	-		Psest_2691	0.60	+0.3
2,880,961	+		Psest_2691	0.61	-0.3
2,880,961	+		Psest_2691	0.61	+0.3
2,880,961	+		Psest_2691	0.61	-0.2
2,880,962	-		Psest_2691	0.61	-0.4
2,880,962	-		Psest_2691	0.61	-0.2
2,880,962	-		Psest_2691	0.61	-0.3
2,880,962	-		Psest_2691	0.61	+0.4
2,880,962	-		Psest_2691	0.61	+0.1