Experiment: Lactate-nitrite with YE; anaerobic; sample3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2522 and Psest_2523 are separated by 48 nucleotides Psest_2523 and Psest_2524 are separated by 63 nucleotides
Psest_2522: Psest_2522 - PAS domain S-box, at 2,702,083 to 2,703,651
_2522
Psest_2523: Psest_2523 - Predicted hydrolase of the alpha/beta-hydrolase fold, at 2,703,700 to 2,704,392
_2523
Psest_2524: Psest_2524 - cytochrome c oxidase, cbb3-type, subunit I, at 2,704,456 to 2,705,880
_2524
Position (kb)
2703
2704
2705 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2702.737 kb on + strand, within Psest_2522 at 2702.737 kb on + strand, within Psest_2522 at 2702.738 kb on - strand, within Psest_2522 at 2702.738 kb on - strand, within Psest_2522 at 2702.738 kb on - strand, within Psest_2522 at 2702.738 kb on - strand, within Psest_2522 at 2702.738 kb on - strand, within Psest_2522 at 2702.738 kb on - strand, within Psest_2522 at 2702.738 kb on - strand, within Psest_2522 at 2702.756 kb on + strand, within Psest_2522 at 2702.757 kb on - strand, within Psest_2522 at 2702.837 kb on + strand, within Psest_2522 at 2702.837 kb on + strand, within Psest_2522 at 2702.838 kb on - strand, within Psest_2522 at 2702.969 kb on + strand, within Psest_2522 at 2702.969 kb on + strand, within Psest_2522 at 2703.264 kb on - strand, within Psest_2522 at 2703.431 kb on + strand, within Psest_2522 at 2703.432 kb on - strand, within Psest_2522 at 2703.622 kb on + strand at 2703.852 kb on - strand, within Psest_2523 at 2703.968 kb on + strand, within Psest_2523 at 2703.969 kb on - strand, within Psest_2523 at 2703.969 kb on - strand, within Psest_2523 at 2704.178 kb on + strand, within Psest_2523 at 2704.178 kb on + strand, within Psest_2523 at 2704.178 kb on + strand, within Psest_2523 at 2704.178 kb on + strand, within Psest_2523 at 2704.178 kb on + strand, within Psest_2523 at 2704.178 kb on + strand, within Psest_2523 at 2704.408 kb on + strand at 2704.409 kb on - strand at 2704.409 kb on - strand at 2704.409 kb on - strand at 2704.411 kb on + strand at 2704.453 kb on + strand at 2704.453 kb on + strand at 2704.453 kb on + strand at 2704.453 kb on + strand at 2704.454 kb on - strand at 2704.480 kb on + strand at 2704.486 kb on + strand at 2704.486 kb on + strand at 2704.486 kb on + strand at 2704.486 kb on + strand at 2704.486 kb on + strand at 2704.486 kb on + strand at 2704.487 kb on - strand at 2704.487 kb on - strand at 2704.487 kb on - strand at 2704.487 kb on - strand at 2704.487 kb on - strand at 2704.622 kb on + strand, within Psest_2524 at 2704.623 kb on - strand, within Psest_2524 at 2704.690 kb on + strand, within Psest_2524 at 2704.690 kb on + strand, within Psest_2524 at 2704.927 kb on + strand, within Psest_2524 at 2704.927 kb on + strand, within Psest_2524 at 2704.927 kb on + strand, within Psest_2524 at 2704.927 kb on + strand, within Psest_2524 at 2704.928 kb on - strand, within Psest_2524 at 2704.928 kb on - strand, within Psest_2524 at 2705.024 kb on - strand, within Psest_2524 at 2705.122 kb on + strand, within Psest_2524 at 2705.122 kb on + strand, within Psest_2524 at 2705.123 kb on - strand, within Psest_2524 at 2705.123 kb on - strand, within Psest_2524 at 2705.123 kb on - strand, within Psest_2524 at 2705.123 kb on - strand, within Psest_2524 at 2705.123 kb on - strand, within Psest_2524 at 2705.123 kb on - strand, within Psest_2524 at 2705.123 kb on - strand, within Psest_2524 at 2705.123 kb on - strand, within Psest_2524 at 2705.123 kb on - strand, within Psest_2524 at 2705.123 kb on - strand, within Psest_2524 at 2705.125 kb on + strand, within Psest_2524 at 2705.125 kb on + strand, within Psest_2524 at 2705.126 kb on - strand, within Psest_2524 at 2705.159 kb on - strand, within Psest_2524 at 2705.165 kb on - strand, within Psest_2524 at 2705.207 kb on - strand, within Psest_2524 at 2705.237 kb on - strand, within Psest_2524
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrite with YE; anaerobic; sample3 remove 2,702,737 + Psest_2522 0.42 +0.8 2,702,737 + Psest_2522 0.42 +0.1 2,702,738 - Psest_2522 0.42 +2.4 2,702,738 - Psest_2522 0.42 -2.5 2,702,738 - Psest_2522 0.42 -1.1 2,702,738 - Psest_2522 0.42 +0.1 2,702,738 - Psest_2522 0.42 -3.1 2,702,738 - Psest_2522 0.42 -0.2 2,702,738 - Psest_2522 0.42 +0.3 2,702,756 + Psest_2522 0.43 +1.6 2,702,757 - Psest_2522 0.43 -0.7 2,702,837 + Psest_2522 0.48 -0.9 2,702,837 + Psest_2522 0.48 +0.7 2,702,838 - Psest_2522 0.48 +0.2 2,702,969 + Psest_2522 0.56 -0.2 2,702,969 + Psest_2522 0.56 -1.1 2,703,264 - Psest_2522 0.75 +0.1 2,703,431 + Psest_2522 0.86 +0.4 2,703,432 - Psest_2522 0.86 -0.6 2,703,622 + -0.9 2,703,852 - Psest_2523 0.22 -0.3 2,703,968 + Psest_2523 0.39 +0.1 2,703,969 - Psest_2523 0.39 -0.3 2,703,969 - Psest_2523 0.39 +0.2 2,704,178 + Psest_2523 0.69 +1.9 2,704,178 + Psest_2523 0.69 -0.3 2,704,178 + Psest_2523 0.69 -2.2 2,704,178 + Psest_2523 0.69 -1.3 2,704,178 + Psest_2523 0.69 +0.1 2,704,178 + Psest_2523 0.69 -1.1 2,704,408 + +0.8 2,704,409 - +1.1 2,704,409 - -1.3 2,704,409 - +0.7 2,704,411 + +0.5 2,704,453 + +0.4 2,704,453 + -0.4 2,704,453 + -0.5 2,704,453 + +0.5 2,704,454 - -1.9 2,704,480 + -0.6 2,704,486 + +1.1 2,704,486 + +1.6 2,704,486 + +0.0 2,704,486 + -0.7 2,704,486 + +0.6 2,704,486 + +0.1 2,704,487 - -0.3 2,704,487 - +1.3 2,704,487 - +0.9 2,704,487 - -1.3 2,704,487 - -1.9 2,704,622 + Psest_2524 0.12 -2.6 2,704,623 - Psest_2524 0.12 -0.8 2,704,690 + Psest_2524 0.16 +0.3 2,704,690 + Psest_2524 0.16 -0.6 2,704,927 + Psest_2524 0.33 -0.2 2,704,927 + Psest_2524 0.33 +0.5 2,704,927 + Psest_2524 0.33 +0.0 2,704,927 + Psest_2524 0.33 -1.3 2,704,928 - Psest_2524 0.33 -1.5 2,704,928 - Psest_2524 0.33 -1.2 2,705,024 - Psest_2524 0.40 -0.4 2,705,122 + Psest_2524 0.47 -1.5 2,705,122 + Psest_2524 0.47 -0.6 2,705,123 - Psest_2524 0.47 +0.1 2,705,123 - Psest_2524 0.47 -0.2 2,705,123 - Psest_2524 0.47 +3.0 2,705,123 - Psest_2524 0.47 -0.7 2,705,123 - Psest_2524 0.47 +0.8 2,705,123 - Psest_2524 0.47 -0.3 2,705,123 - Psest_2524 0.47 +0.5 2,705,123 - Psest_2524 0.47 +0.1 2,705,123 - Psest_2524 0.47 -1.5 2,705,123 - Psest_2524 0.47 +0.6 2,705,125 + Psest_2524 0.47 +0.2 2,705,125 + Psest_2524 0.47 +1.5 2,705,126 - Psest_2524 0.47 +0.1 2,705,159 - Psest_2524 0.49 -3.0 2,705,165 - Psest_2524 0.50 -0.9 2,705,207 - Psest_2524 0.53 +3.1 2,705,237 - Psest_2524 0.55 +0.8
Or see this region's nucleotide sequence