Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2523

Experiment: Lactate-nitrite with YE; anaerobic; sample3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2522 and Psest_2523 are separated by 48 nucleotidesPsest_2523 and Psest_2524 are separated by 63 nucleotides Psest_2522: Psest_2522 - PAS domain S-box, at 2,702,083 to 2,703,651 _2522 Psest_2523: Psest_2523 - Predicted hydrolase of the alpha/beta-hydrolase fold, at 2,703,700 to 2,704,392 _2523 Psest_2524: Psest_2524 - cytochrome c oxidase, cbb3-type, subunit I, at 2,704,456 to 2,705,880 _2524 Position (kb) 2703 2704 2705Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2702.737 kb on + strand, within Psest_2522at 2702.737 kb on + strand, within Psest_2522at 2702.738 kb on - strand, within Psest_2522at 2702.738 kb on - strand, within Psest_2522at 2702.738 kb on - strand, within Psest_2522at 2702.738 kb on - strand, within Psest_2522at 2702.738 kb on - strand, within Psest_2522at 2702.738 kb on - strand, within Psest_2522at 2702.738 kb on - strand, within Psest_2522at 2702.756 kb on + strand, within Psest_2522at 2702.757 kb on - strand, within Psest_2522at 2702.837 kb on + strand, within Psest_2522at 2702.837 kb on + strand, within Psest_2522at 2702.838 kb on - strand, within Psest_2522at 2702.969 kb on + strand, within Psest_2522at 2702.969 kb on + strand, within Psest_2522at 2703.264 kb on - strand, within Psest_2522at 2703.431 kb on + strand, within Psest_2522at 2703.432 kb on - strand, within Psest_2522at 2703.622 kb on + strandat 2703.852 kb on - strand, within Psest_2523at 2703.968 kb on + strand, within Psest_2523at 2703.969 kb on - strand, within Psest_2523at 2703.969 kb on - strand, within Psest_2523at 2704.178 kb on + strand, within Psest_2523at 2704.178 kb on + strand, within Psest_2523at 2704.178 kb on + strand, within Psest_2523at 2704.178 kb on + strand, within Psest_2523at 2704.178 kb on + strand, within Psest_2523at 2704.178 kb on + strand, within Psest_2523at 2704.408 kb on + strandat 2704.409 kb on - strandat 2704.409 kb on - strandat 2704.409 kb on - strandat 2704.411 kb on + strandat 2704.453 kb on + strandat 2704.453 kb on + strandat 2704.453 kb on + strandat 2704.453 kb on + strandat 2704.454 kb on - strandat 2704.480 kb on + strandat 2704.486 kb on + strandat 2704.486 kb on + strandat 2704.486 kb on + strandat 2704.486 kb on + strandat 2704.486 kb on + strandat 2704.486 kb on + strandat 2704.487 kb on - strandat 2704.487 kb on - strandat 2704.487 kb on - strandat 2704.487 kb on - strandat 2704.487 kb on - strandat 2704.622 kb on + strand, within Psest_2524at 2704.623 kb on - strand, within Psest_2524at 2704.690 kb on + strand, within Psest_2524at 2704.690 kb on + strand, within Psest_2524at 2704.927 kb on + strand, within Psest_2524at 2704.927 kb on + strand, within Psest_2524at 2704.927 kb on + strand, within Psest_2524at 2704.927 kb on + strand, within Psest_2524at 2704.928 kb on - strand, within Psest_2524at 2704.928 kb on - strand, within Psest_2524at 2705.024 kb on - strand, within Psest_2524at 2705.122 kb on + strand, within Psest_2524at 2705.122 kb on + strand, within Psest_2524at 2705.123 kb on - strand, within Psest_2524at 2705.123 kb on - strand, within Psest_2524at 2705.123 kb on - strand, within Psest_2524at 2705.123 kb on - strand, within Psest_2524at 2705.123 kb on - strand, within Psest_2524at 2705.123 kb on - strand, within Psest_2524at 2705.123 kb on - strand, within Psest_2524at 2705.123 kb on - strand, within Psest_2524at 2705.123 kb on - strand, within Psest_2524at 2705.123 kb on - strand, within Psest_2524at 2705.125 kb on + strand, within Psest_2524at 2705.125 kb on + strand, within Psest_2524at 2705.126 kb on - strand, within Psest_2524at 2705.159 kb on - strand, within Psest_2524at 2705.165 kb on - strand, within Psest_2524at 2705.207 kb on - strand, within Psest_2524at 2705.237 kb on - strand, within Psest_2524

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-nitrite with YE; anaerobic; sample3
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2,702,737 + Psest_2522 0.42 +0.8
2,702,737 + Psest_2522 0.42 +0.1
2,702,738 - Psest_2522 0.42 +2.4
2,702,738 - Psest_2522 0.42 -2.5
2,702,738 - Psest_2522 0.42 -1.1
2,702,738 - Psest_2522 0.42 +0.1
2,702,738 - Psest_2522 0.42 -3.1
2,702,738 - Psest_2522 0.42 -0.2
2,702,738 - Psest_2522 0.42 +0.3
2,702,756 + Psest_2522 0.43 +1.6
2,702,757 - Psest_2522 0.43 -0.7
2,702,837 + Psest_2522 0.48 -0.9
2,702,837 + Psest_2522 0.48 +0.7
2,702,838 - Psest_2522 0.48 +0.2
2,702,969 + Psest_2522 0.56 -0.2
2,702,969 + Psest_2522 0.56 -1.1
2,703,264 - Psest_2522 0.75 +0.1
2,703,431 + Psest_2522 0.86 +0.4
2,703,432 - Psest_2522 0.86 -0.6
2,703,622 + -0.9
2,703,852 - Psest_2523 0.22 -0.3
2,703,968 + Psest_2523 0.39 +0.1
2,703,969 - Psest_2523 0.39 -0.3
2,703,969 - Psest_2523 0.39 +0.2
2,704,178 + Psest_2523 0.69 +1.9
2,704,178 + Psest_2523 0.69 -0.3
2,704,178 + Psest_2523 0.69 -2.2
2,704,178 + Psest_2523 0.69 -1.3
2,704,178 + Psest_2523 0.69 +0.1
2,704,178 + Psest_2523 0.69 -1.1
2,704,408 + +0.8
2,704,409 - +1.1
2,704,409 - -1.3
2,704,409 - +0.7
2,704,411 + +0.5
2,704,453 + +0.4
2,704,453 + -0.4
2,704,453 + -0.5
2,704,453 + +0.5
2,704,454 - -1.9
2,704,480 + -0.6
2,704,486 + +1.1
2,704,486 + +1.6
2,704,486 + +0.0
2,704,486 + -0.7
2,704,486 + +0.6
2,704,486 + +0.1
2,704,487 - -0.3
2,704,487 - +1.3
2,704,487 - +0.9
2,704,487 - -1.3
2,704,487 - -1.9
2,704,622 + Psest_2524 0.12 -2.6
2,704,623 - Psest_2524 0.12 -0.8
2,704,690 + Psest_2524 0.16 +0.3
2,704,690 + Psest_2524 0.16 -0.6
2,704,927 + Psest_2524 0.33 -0.2
2,704,927 + Psest_2524 0.33 +0.5
2,704,927 + Psest_2524 0.33 +0.0
2,704,927 + Psest_2524 0.33 -1.3
2,704,928 - Psest_2524 0.33 -1.5
2,704,928 - Psest_2524 0.33 -1.2
2,705,024 - Psest_2524 0.40 -0.4
2,705,122 + Psest_2524 0.47 -1.5
2,705,122 + Psest_2524 0.47 -0.6
2,705,123 - Psest_2524 0.47 +0.1
2,705,123 - Psest_2524 0.47 -0.2
2,705,123 - Psest_2524 0.47 +3.0
2,705,123 - Psest_2524 0.47 -0.7
2,705,123 - Psest_2524 0.47 +0.8
2,705,123 - Psest_2524 0.47 -0.3
2,705,123 - Psest_2524 0.47 +0.5
2,705,123 - Psest_2524 0.47 +0.1
2,705,123 - Psest_2524 0.47 -1.5
2,705,123 - Psest_2524 0.47 +0.6
2,705,125 + Psest_2524 0.47 +0.2
2,705,125 + Psest_2524 0.47 +1.5
2,705,126 - Psest_2524 0.47 +0.1
2,705,159 - Psest_2524 0.49 -3.0
2,705,165 - Psest_2524 0.50 -0.9
2,705,207 - Psest_2524 0.53 +3.1
2,705,237 - Psest_2524 0.55 +0.8

Or see this region's nucleotide sequence