Strain Fitness in Shewanella oneidensis MR-1 around SO3581

Experiment: NoPredeControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO_3579 and SO3580 are separated by 77 nucleotidesSO3580 and SO3581 are separated by 6 nucleotidesSO3581 and tRNA-Phe-1 are separated by 35 nucleotidestRNA-Phe-1 and tRNA-Leu-5 are separated by 55 nucleotidestRNA-Leu-5 and tRNA-Leu-4 are separated by 41 nucleotidestRNA-Leu-4 and SO3582 are separated by 162 nucleotides SO_3579: SO_3579 - no description, at 3,745,939 to 3,746,910 _3579 SO3580: SO3580 - conserved hypothetical protein (NCBI ptt file), at 3,746,988 to 3,747,794 SO3580 SO3581: SO3581 - hypothetical protein (NCBI ptt file), at 3,747,801 to 3,747,977 SO3581 SO_t091: tRNA-Phe-1 - tRNA-Phe (RefSeq), at 3,748,013 to 3,748,088 tRNA-Phe-1 SO_t092: tRNA-Leu-5 - tRNA-Leu (RefSeq), at 3,748,144 to 3,748,230 tRNA-Leu-5 SO_t093: tRNA-Leu-4 - tRNA-Leu (RefSeq), at 3,748,272 to 3,748,358 tRNA-Leu-4 SO3582: SO3582 - methyl-accepting chemotaxis protein (NCBI), at 3,748,521 to 3,750,146 SO3582 Position (kb) 3747 3748Strain fitness (log2 ratio) -2 -1 0 1 2at 3746.854 kb on + strandat 3746.862 kb on - strandat 3747.875 kb on + strand, within SO3581at 3748.103 kb on + strandat 3748.174 kb on + strand, within tRNA-Leu-5at 3748.360 kb on + strandat 3748.368 kb on - strandat 3748.462 kb on + strandat 3748.483 kb on + strandat 3748.483 kb on + strandat 3748.491 kb on - strandat 3748.495 kb on + strandat 3748.572 kb on + strandat 3748.572 kb on + strandat 3748.580 kb on - strandat 3748.580 kb on - strandat 3748.629 kb on - strandat 3748.636 kb on - strandat 3748.641 kb on - strandat 3748.750 kb on + strand, within SO3582at 3748.751 kb on - strand, within SO3582at 3748.762 kb on + strand, within SO3582at 3748.830 kb on - strand, within SO3582at 3748.830 kb on - strand, within SO3582

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPredeControl
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3,746,854 + -0.5
3,746,862 - -0.3
3,747,875 + SO3581 0.42 +0.5
3,748,103 + -0.0
3,748,174 + tRNA-Leu-5 SO_t092 0.34 +1.7
3,748,360 + -0.4
3,748,368 - +2.0
3,748,462 + -0.8
3,748,483 + -0.3
3,748,483 + +1.2
3,748,491 - -1.2
3,748,495 + -1.1
3,748,572 + -0.4
3,748,572 + +0.3
3,748,580 - -0.4
3,748,580 - -2.3
3,748,629 - -0.1
3,748,636 - +1.0
3,748,641 - +0.2
3,748,750 + SO3582 0.14 +0.0
3,748,751 - SO3582 0.14 +0.8
3,748,762 + SO3582 0.15 -0.1
3,748,830 - SO3582 0.19 +0.4
3,748,830 - SO3582 0.19 -0.8

Or see this region's nucleotide sequence