Experiment: NoPredeControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO_3579 and SO3580 are separated by 77 nucleotides SO3580 and SO3581 are separated by 6 nucleotides SO3581 and tRNA-Phe-1 are separated by 35 nucleotides tRNA-Phe-1 and tRNA-Leu-5 are separated by 55 nucleotides tRNA-Leu-5 and tRNA-Leu-4 are separated by 41 nucleotides tRNA-Leu-4 and SO3582 are separated by 162 nucleotides
SO_3579: SO_3579 - no description, at 3,745,939 to 3,746,910
_3579
SO3580: SO3580 - conserved hypothetical protein (NCBI ptt file), at 3,746,988 to 3,747,794
SO3580
SO3581: SO3581 - hypothetical protein (NCBI ptt file), at 3,747,801 to 3,747,977
SO3581
SO_t091: tRNA-Phe-1 - tRNA-Phe (RefSeq), at 3,748,013 to 3,748,088
tRNA-Phe-1
SO_t092: tRNA-Leu-5 - tRNA-Leu (RefSeq), at 3,748,144 to 3,748,230
tRNA-Leu-5
SO_t093: tRNA-Leu-4 - tRNA-Leu (RefSeq), at 3,748,272 to 3,748,358
tRNA-Leu-4
SO3582: SO3582 - methyl-accepting chemotaxis protein (NCBI), at 3,748,521 to 3,750,146
SO3582
Position (kb)
3747
3748 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3746.854 kb on + strand at 3746.862 kb on - strand at 3747.875 kb on + strand, within SO3581 at 3748.103 kb on + strand at 3748.174 kb on + strand, within tRNA-Leu-5 at 3748.360 kb on + strand at 3748.368 kb on - strand at 3748.462 kb on + strand at 3748.483 kb on + strand at 3748.483 kb on + strand at 3748.491 kb on - strand at 3748.495 kb on + strand at 3748.572 kb on + strand at 3748.572 kb on + strand at 3748.580 kb on - strand at 3748.580 kb on - strand at 3748.629 kb on - strand at 3748.636 kb on - strand at 3748.641 kb on - strand at 3748.750 kb on + strand, within SO3582 at 3748.751 kb on - strand, within SO3582 at 3748.762 kb on + strand, within SO3582 at 3748.830 kb on - strand, within SO3582 at 3748.830 kb on - strand, within SO3582
Per-strain Table
Position Strand Gene LocusTag Fraction NoPredeControl remove 3,746,854 + -0.5 3,746,862 - -0.3 3,747,875 + SO3581 0.42 +0.5 3,748,103 + -0.0 3,748,174 + tRNA-Leu-5 SO_t092 0.34 +1.7 3,748,360 + -0.4 3,748,368 - +2.0 3,748,462 + -0.8 3,748,483 + -0.3 3,748,483 + +1.2 3,748,491 - -1.2 3,748,495 + -1.1 3,748,572 + -0.4 3,748,572 + +0.3 3,748,580 - -0.4 3,748,580 - -2.3 3,748,629 - -0.1 3,748,636 - +1.0 3,748,641 - +0.2 3,748,750 + SO3582 0.14 +0.0 3,748,751 - SO3582 0.14 +0.8 3,748,762 + SO3582 0.15 -0.1 3,748,830 - SO3582 0.19 +0.4 3,748,830 - SO3582 0.19 -0.8
Or see this region's nucleotide sequence