Experiment: Lactate-nitrite; anaerobic; with copper; sample3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0811 and Psest_0812 are separated by 170 nucleotides Psest_0812 and Psest_0813 are separated by 3 nucleotides Psest_0813 and Psest_0814 overlap by 17 nucleotides
Psest_0811: Psest_0811 - heme d1 biosynthesis radical SAM protein NirJ, at 886,662 to 887,843
_0811
Psest_0812: Psest_0812 - hypothetical protein, at 888,014 to 888,262
_0812
Psest_0813: Psest_0813 - Heme/copper-type cytochrome/quinol oxidase, subunit 3, at 888,266 to 888,853
_0813
Psest_0814: Psest_0814 - MoxR-like ATPases, at 888,837 to 889,649
_0814
Position (kb) 888
889 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 887.302 kb on + strand, within Psest_0811 at 887.302 kb on + strand, within Psest_0811 at 887.302 kb on + strand, within Psest_0811 at 887.303 kb on - strand, within Psest_0811 at 887.321 kb on + strand, within Psest_0811 at 887.452 kb on + strand, within Psest_0811 at 887.453 kb on - strand, within Psest_0811 at 887.702 kb on - strand, within Psest_0811 at 887.702 kb on - strand, within Psest_0811 at 887.791 kb on - strand at 887.791 kb on - strand at 887.824 kb on + strand at 887.825 kb on - strand at 887.955 kb on - strand at 888.267 kb on + strand at 888.267 kb on + strand at 888.267 kb on + strand at 888.267 kb on + strand at 888.268 kb on - strand at 888.268 kb on - strand at 888.268 kb on - strand at 888.279 kb on + strand at 888.279 kb on + strand at 888.279 kb on + strand at 888.311 kb on - strand at 888.328 kb on - strand, within Psest_0813 at 888.460 kb on - strand, within Psest_0813 at 888.540 kb on + strand, within Psest_0813 at 888.540 kb on + strand, within Psest_0813 at 888.540 kb on + strand, within Psest_0813 at 888.540 kb on + strand, within Psest_0813 at 888.540 kb on + strand, within Psest_0813 at 888.540 kb on + strand, within Psest_0813 at 888.541 kb on - strand, within Psest_0813 at 888.605 kb on + strand, within Psest_0813 at 888.605 kb on + strand, within Psest_0813 at 888.606 kb on - strand, within Psest_0813 at 889.195 kb on + strand, within Psest_0814 at 889.195 kb on + strand, within Psest_0814 at 889.196 kb on - strand, within Psest_0814 at 889.196 kb on - strand, within Psest_0814 at 889.196 kb on - strand, within Psest_0814 at 889.460 kb on - strand, within Psest_0814 at 889.598 kb on - strand at 889.598 kb on - strand at 889.658 kb on - strand at 889.658 kb on - strand at 889.658 kb on - strand at 889.765 kb on + strand at 889.765 kb on + strand at 889.766 kb on - strand at 889.766 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrite; anaerobic; with copper; sample3 remove 887,302 + Psest_0811 0.54 -0.7 887,302 + Psest_0811 0.54 -2.0 887,302 + Psest_0811 0.54 +0.0 887,303 - Psest_0811 0.54 -1.1 887,321 + Psest_0811 0.56 -0.8 887,452 + Psest_0811 0.67 -1.0 887,453 - Psest_0811 0.67 -2.2 887,702 - Psest_0811 0.88 -1.8 887,702 - Psest_0811 0.88 -0.7 887,791 - -2.5 887,791 - -2.6 887,824 + -1.2 887,825 - -1.3 887,955 - -0.6 888,267 + -2.0 888,267 + -3.9 888,267 + -3.3 888,267 + -3.1 888,268 - -3.0 888,268 - -2.2 888,268 - -2.7 888,279 + -3.5 888,279 + -4.2 888,279 + -1.8 888,311 - -2.1 888,328 - Psest_0813 0.11 -3.2 888,460 - Psest_0813 0.33 -1.6 888,540 + Psest_0813 0.47 -2.8 888,540 + Psest_0813 0.47 -3.5 888,540 + Psest_0813 0.47 -3.5 888,540 + Psest_0813 0.47 -4.5 888,540 + Psest_0813 0.47 -1.8 888,540 + Psest_0813 0.47 +0.6 888,541 - Psest_0813 0.47 -2.6 888,605 + Psest_0813 0.58 -2.6 888,605 + Psest_0813 0.58 -2.3 888,606 - Psest_0813 0.58 -2.9 889,195 + Psest_0814 0.44 +1.4 889,195 + Psest_0814 0.44 -2.6 889,196 - Psest_0814 0.44 -3.5 889,196 - Psest_0814 0.44 -1.6 889,196 - Psest_0814 0.44 -2.2 889,460 - Psest_0814 0.77 -3.5 889,598 - -3.3 889,598 - -3.3 889,658 - -2.6 889,658 - -3.1 889,658 - -1.4 889,765 + +1.4 889,765 + +0.1 889,766 - +0.1 889,766 - +0.6
Or see this region's nucleotide sequence