Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2065

Experiment: Lactate-nitrite; anaerobic; with copper; sample3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_2064 and Psest_2065 are separated by 1 nucleotidesPsest_2065 and Psest_2066 are separated by 1 nucleotides Psest_2064: Psest_2064 - ABC-type uncharacterized transport system, duplicated ATPase component, at 2,189,584 to 2,191,245 _2064 Psest_2065: Psest_2065 - ABC-type uncharacterized transport system, permease component, at 2,191,247 to 2,192,266 _2065 Psest_2066: Psest_2066 - ABC-type uncharacterized transport system, permease component, at 2,192,268 to 2,193,341 _2066 Position (kb) 2191 2192 2193Strain fitness (log2 ratio) -2 -1 0 1 2at 2190.551 kb on - strand, within Psest_2064at 2191.249 kb on - strandat 2191.249 kb on - strandat 2191.249 kb on - strandat 2191.566 kb on + strand, within Psest_2065at 2191.695 kb on - strand, within Psest_2065at 2191.699 kb on - strand, within Psest_2065at 2192.926 kb on + strand, within Psest_2066

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-nitrite; anaerobic; with copper; sample3
remove
2,190,551 - Psest_2064 0.58 +1.9
2,191,249 - -1.3
2,191,249 - -2.1
2,191,249 - -0.5
2,191,566 + Psest_2065 0.31 -2.1
2,191,695 - Psest_2065 0.44 -0.7
2,191,699 - Psest_2065 0.44 -0.7
2,192,926 + Psest_2066 0.61 +0.7

Or see this region's nucleotide sequence