Experiment: Lactate-nitrite; anaerobic; with copper; sample1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0785 and Psest_0786 are separated by 324 nucleotides Psest_0786 and Psest_0787 are separated by 363 nucleotides
Psest_0785: Psest_0785 - Thioredoxin reductase, at 858,102 to 859,049
_0785
Psest_0786: Psest_0786 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 859,374 to 860,399
_0786
Psest_0787: Psest_0787 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 860,763 to 861,761
_0787
Position (kb) 859
860
861 Strain fitness (log2 ratio) -2
-1
0
1
2 at 858.457 kb on + strand, within Psest_0785 at 858.581 kb on - strand, within Psest_0785 at 858.581 kb on - strand, within Psest_0785 at 858.962 kb on - strand at 858.962 kb on - strand at 858.962 kb on - strand at 858.962 kb on - strand at 859.077 kb on + strand at 859.078 kb on - strand at 859.384 kb on + strand at 859.821 kb on + strand, within Psest_0786 at 859.821 kb on + strand, within Psest_0786 at 859.821 kb on + strand, within Psest_0786 at 859.821 kb on + strand, within Psest_0786 at 859.821 kb on + strand, within Psest_0786 at 859.822 kb on - strand, within Psest_0786 at 859.822 kb on - strand, within Psest_0786 at 859.822 kb on - strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.105 kb on - strand, within Psest_0786 at 860.105 kb on - strand, within Psest_0786 at 860.105 kb on - strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.161 kb on + strand, within Psest_0786 at 860.161 kb on + strand, within Psest_0786 at 860.162 kb on - strand, within Psest_0786 at 860.268 kb on - strand, within Psest_0786 at 860.268 kb on - strand, within Psest_0786 at 860.562 kb on + strand at 860.566 kb on - strand at 860.766 kb on + strand at 860.766 kb on + strand at 860.766 kb on + strand at 860.766 kb on + strand at 860.766 kb on + strand at 860.766 kb on + strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.802 kb on + strand at 860.958 kb on + strand, within Psest_0787 at 861.057 kb on + strand, within Psest_0787 at 861.058 kb on - strand, within Psest_0787 at 861.058 kb on - strand, within Psest_0787 at 861.058 kb on - strand, within Psest_0787 at 861.058 kb on - strand, within Psest_0787 at 861.180 kb on + strand, within Psest_0787 at 861.352 kb on - strand, within Psest_0787
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrite; anaerobic; with copper; sample1 remove 858,457 + Psest_0785 0.37 -0.3 858,581 - Psest_0785 0.51 -0.0 858,581 - Psest_0785 0.51 +1.6 858,962 - +0.4 858,962 - -0.2 858,962 - -0.2 858,962 - -0.9 859,077 + -0.0 859,078 - -0.4 859,384 + +0.4 859,821 + Psest_0786 0.44 +0.0 859,821 + Psest_0786 0.44 +0.2 859,821 + Psest_0786 0.44 +1.6 859,821 + Psest_0786 0.44 +0.1 859,821 + Psest_0786 0.44 +1.2 859,822 - Psest_0786 0.44 +0.2 859,822 - Psest_0786 0.44 -1.5 859,822 - Psest_0786 0.44 +1.9 860,079 + Psest_0786 0.69 -0.6 860,079 + Psest_0786 0.69 -1.6 860,079 + Psest_0786 0.69 +2.5 860,079 + Psest_0786 0.69 +0.4 860,079 + Psest_0786 0.69 +0.1 860,079 + Psest_0786 0.69 +0.7 860,079 + Psest_0786 0.69 +0.6 860,079 + Psest_0786 0.69 -0.3 860,079 + Psest_0786 0.69 -1.4 860,079 + Psest_0786 0.69 -0.7 860,079 + Psest_0786 0.69 -0.7 860,079 + Psest_0786 0.69 +0.4 860,079 + Psest_0786 0.69 +1.0 860,079 + Psest_0786 0.69 +0.6 860,079 + Psest_0786 0.69 -0.3 860,079 + Psest_0786 0.69 +0.6 860,079 + Psest_0786 0.69 -0.6 860,079 + Psest_0786 0.69 +0.9 860,080 - Psest_0786 0.69 -0.7 860,080 - Psest_0786 0.69 +0.4 860,080 - Psest_0786 0.69 +0.7 860,080 - Psest_0786 0.69 +0.5 860,080 - Psest_0786 0.69 +0.3 860,080 - Psest_0786 0.69 +2.2 860,080 - Psest_0786 0.69 +0.9 860,080 - Psest_0786 0.69 -1.9 860,080 - Psest_0786 0.69 +0.4 860,080 - Psest_0786 0.69 -0.7 860,080 - Psest_0786 0.69 +0.0 860,080 - Psest_0786 0.69 -1.1 860,080 - Psest_0786 0.69 +0.6 860,080 - Psest_0786 0.69 +0.6 860,080 - Psest_0786 0.69 -1.2 860,080 - Psest_0786 0.69 -0.6 860,080 - Psest_0786 0.69 +0.6 860,080 - Psest_0786 0.69 -0.0 860,080 - Psest_0786 0.69 -0.0 860,080 - Psest_0786 0.69 +0.8 860,080 - Psest_0786 0.69 -0.7 860,080 - Psest_0786 0.69 +1.3 860,080 - Psest_0786 0.69 -0.2 860,080 - Psest_0786 0.69 +1.3 860,080 - Psest_0786 0.69 -0.9 860,105 - Psest_0786 0.71 +0.1 860,105 - Psest_0786 0.71 +0.1 860,105 - Psest_0786 0.71 +0.4 860,112 + Psest_0786 0.72 +1.2 860,112 + Psest_0786 0.72 -2.0 860,112 + Psest_0786 0.72 -0.3 860,112 + Psest_0786 0.72 +0.7 860,112 + Psest_0786 0.72 +2.6 860,112 + Psest_0786 0.72 +0.7 860,112 + Psest_0786 0.72 +0.2 860,112 + Psest_0786 0.72 -1.4 860,112 + Psest_0786 0.72 +0.9 860,112 + Psest_0786 0.72 +0.0 860,112 + Psest_0786 0.72 +0.7 860,112 + Psest_0786 0.72 +0.9 860,112 + Psest_0786 0.72 +0.5 860,112 + Psest_0786 0.72 -0.6 860,112 + Psest_0786 0.72 +2.0 860,112 + Psest_0786 0.72 -1.1 860,112 + Psest_0786 0.72 +0.3 860,112 + Psest_0786 0.72 +0.2 860,113 - Psest_0786 0.72 +0.4 860,113 - Psest_0786 0.72 -1.5 860,113 - Psest_0786 0.72 +0.6 860,113 - Psest_0786 0.72 +0.7 860,113 - Psest_0786 0.72 -0.2 860,113 - Psest_0786 0.72 -0.2 860,113 - Psest_0786 0.72 +0.2 860,113 - Psest_0786 0.72 +0.2 860,113 - Psest_0786 0.72 -0.1 860,113 - Psest_0786 0.72 +2.2 860,113 - Psest_0786 0.72 +0.4 860,113 - Psest_0786 0.72 -1.6 860,113 - Psest_0786 0.72 -0.4 860,113 - Psest_0786 0.72 -0.8 860,113 - Psest_0786 0.72 -0.2 860,113 - Psest_0786 0.72 -0.3 860,113 - Psest_0786 0.72 +0.4 860,113 - Psest_0786 0.72 -0.9 860,161 + Psest_0786 0.77 +0.9 860,161 + Psest_0786 0.77 +1.0 860,162 - Psest_0786 0.77 +0.3 860,268 - Psest_0786 0.87 +0.9 860,268 - Psest_0786 0.87 -0.3 860,562 + +1.3 860,566 - -0.2 860,766 + -1.0 860,766 + +0.7 860,766 + -0.5 860,766 + +1.3 860,766 + +0.1 860,766 + -0.2 860,767 - +0.6 860,767 - +0.1 860,767 - +0.2 860,767 - -1.4 860,767 - -0.4 860,767 - -0.0 860,767 - +1.0 860,767 - -0.9 860,767 - -0.6 860,767 - +1.4 860,802 + +0.5 860,958 + Psest_0787 0.20 -2.0 861,057 + Psest_0787 0.29 -0.9 861,058 - Psest_0787 0.30 -0.4 861,058 - Psest_0787 0.30 -0.1 861,058 - Psest_0787 0.30 -0.6 861,058 - Psest_0787 0.30 +0.0 861,180 + Psest_0787 0.42 -2.3 861,352 - Psest_0787 0.59 -0.1
Or see this region's nucleotide sequence