Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0235

Experiment: Lactate-nitrite; anaerobic; with copper; sample1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0234 and Psest_0235 are separated by 500 nucleotidesPsest_0235 and Psest_0236 are separated by 62 nucleotides Psest_0234: Psest_0234 - dihydroxy-acid dehydratase, at 243,547 to 245,385 _0234 Psest_0235: Psest_0235 - isoform II., at 245,886 to 246,734 _0235 Psest_0236: Psest_0236 - Predicted SAM-dependent methyltransferases, at 246,797 to 247,993 _0236 Position (kb) 245 246 247Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 245.419 kb on + strandat 245.419 kb on + strandat 245.419 kb on + strandat 245.419 kb on + strandat 245.420 kb on - strandat 245.420 kb on - strandat 245.420 kb on - strandat 245.420 kb on - strandat 245.425 kb on + strandat 245.425 kb on + strandat 245.426 kb on - strandat 245.550 kb on + strandat 245.551 kb on - strandat 245.562 kb on + strandat 245.562 kb on + strandat 245.563 kb on - strandat 245.563 kb on - strandat 245.654 kb on - strandat 245.747 kb on + strandat 245.747 kb on + strandat 245.747 kb on + strandat 245.748 kb on - strandat 245.826 kb on + strandat 245.851 kb on - strandat 245.851 kb on - strandat 245.851 kb on - strandat 245.857 kb on + strandat 245.859 kb on + strandat 245.859 kb on + strandat 245.859 kb on + strandat 245.859 kb on + strandat 245.859 kb on + strandat 245.907 kb on + strandat 245.908 kb on - strandat 245.908 kb on - strandat 245.908 kb on - strandat 245.908 kb on - strandat 245.908 kb on - strandat 245.911 kb on + strandat 245.911 kb on + strandat 245.912 kb on - strandat 246.022 kb on - strand, within Psest_0235at 246.147 kb on + strand, within Psest_0235at 246.147 kb on + strand, within Psest_0235at 246.148 kb on - strand, within Psest_0235at 246.148 kb on - strand, within Psest_0235at 246.148 kb on - strand, within Psest_0235at 246.249 kb on + strand, within Psest_0235at 246.249 kb on + strand, within Psest_0235at 246.250 kb on - strand, within Psest_0235at 246.276 kb on + strand, within Psest_0235at 246.276 kb on + strand, within Psest_0235at 246.285 kb on + strand, within Psest_0235at 246.285 kb on + strand, within Psest_0235at 246.285 kb on + strand, within Psest_0235at 246.285 kb on + strand, within Psest_0235at 246.285 kb on + strand, within Psest_0235at 246.285 kb on + strand, within Psest_0235at 246.285 kb on + strand, within Psest_0235at 246.285 kb on + strand, within Psest_0235at 246.285 kb on + strand, within Psest_0235at 246.286 kb on - strand, within Psest_0235at 246.286 kb on - strand, within Psest_0235at 246.286 kb on - strand, within Psest_0235at 246.286 kb on - strand, within Psest_0235at 246.286 kb on - strand, within Psest_0235at 246.286 kb on - strand, within Psest_0235at 246.286 kb on - strand, within Psest_0235at 246.286 kb on - strand, within Psest_0235at 246.318 kb on - strand, within Psest_0235at 246.318 kb on - strand, within Psest_0235at 246.402 kb on + strand, within Psest_0235at 246.403 kb on - strand, within Psest_0235at 246.561 kb on + strand, within Psest_0235at 246.562 kb on - strand, within Psest_0235at 246.669 kb on + strandat 246.712 kb on + strandat 246.712 kb on + strandat 246.713 kb on - strandat 246.713 kb on - strandat 246.713 kb on - strandat 246.838 kb on - strandat 246.838 kb on - strandat 247.287 kb on - strand, within Psest_0236at 247.305 kb on + strand, within Psest_0236at 247.305 kb on + strand, within Psest_0236at 247.306 kb on - strand, within Psest_0236at 247.306 kb on - strand, within Psest_0236at 247.306 kb on - strand, within Psest_0236at 247.306 kb on - strand, within Psest_0236at 247.306 kb on - strand, within Psest_0236at 247.341 kb on + strand, within Psest_0236at 247.341 kb on + strand, within Psest_0236at 247.341 kb on + strand, within Psest_0236at 247.341 kb on + strand, within Psest_0236at 247.342 kb on - strand, within Psest_0236at 247.342 kb on - strand, within Psest_0236at 247.342 kb on - strand, within Psest_0236at 247.377 kb on + strand, within Psest_0236at 247.377 kb on + strand, within Psest_0236at 247.377 kb on + strand, within Psest_0236at 247.378 kb on - strand, within Psest_0236at 247.483 kb on - strand, within Psest_0236at 247.483 kb on - strand, within Psest_0236at 247.532 kb on + strand, within Psest_0236at 247.532 kb on + strand, within Psest_0236at 247.556 kb on + strand, within Psest_0236at 247.556 kb on + strand, within Psest_0236at 247.557 kb on - strand, within Psest_0236at 247.557 kb on - strand, within Psest_0236at 247.674 kb on + strand, within Psest_0236at 247.674 kb on + strand, within Psest_0236

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-nitrite; anaerobic; with copper; sample1
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245,419 + -2.2
245,419 + +0.4
245,419 + -0.6
245,419 + -0.6
245,420 - -0.3
245,420 - -0.3
245,420 - +1.2
245,420 - +1.5
245,425 + -0.6
245,425 + -0.1
245,426 - +1.0
245,550 + +0.6
245,551 - -0.4
245,562 + +1.1
245,562 + -0.5
245,563 - -0.1
245,563 - -0.2
245,654 - +1.0
245,747 + -0.2
245,747 + -0.2
245,747 + -0.9
245,748 - -0.3
245,826 + +0.5
245,851 - -0.2
245,851 - -0.5
245,851 - +0.8
245,857 + +0.7
245,859 + +0.8
245,859 + +0.1
245,859 + -0.4
245,859 + +0.1
245,859 + -0.6
245,907 + -0.1
245,908 - -2.8
245,908 - -0.6
245,908 - +0.5
245,908 - +1.4
245,908 - -1.6
245,911 + +0.4
245,911 + +0.8
245,912 - +0.4
246,022 - Psest_0235 0.16 +2.1
246,147 + Psest_0235 0.31 +0.4
246,147 + Psest_0235 0.31 +0.2
246,148 - Psest_0235 0.31 -0.5
246,148 - Psest_0235 0.31 +1.2
246,148 - Psest_0235 0.31 +0.5
246,249 + Psest_0235 0.43 +1.1
246,249 + Psest_0235 0.43 +0.1
246,250 - Psest_0235 0.43 +1.7
246,276 + Psest_0235 0.46 -0.5
246,276 + Psest_0235 0.46 -2.2
246,285 + Psest_0235 0.47 +1.1
246,285 + Psest_0235 0.47 +0.7
246,285 + Psest_0235 0.47 -0.4
246,285 + Psest_0235 0.47 +0.1
246,285 + Psest_0235 0.47 +0.4
246,285 + Psest_0235 0.47 +0.8
246,285 + Psest_0235 0.47 +1.1
246,285 + Psest_0235 0.47 -0.2
246,285 + Psest_0235 0.47 +1.3
246,286 - Psest_0235 0.47 -0.6
246,286 - Psest_0235 0.47 -0.4
246,286 - Psest_0235 0.47 +1.1
246,286 - Psest_0235 0.47 +1.4
246,286 - Psest_0235 0.47 +1.0
246,286 - Psest_0235 0.47 +0.6
246,286 - Psest_0235 0.47 -0.1
246,286 - Psest_0235 0.47 +0.4
246,318 - Psest_0235 0.51 +1.7
246,318 - Psest_0235 0.51 +1.4
246,402 + Psest_0235 0.61 +0.6
246,403 - Psest_0235 0.61 +1.4
246,561 + Psest_0235 0.80 +1.3
246,562 - Psest_0235 0.80 +0.4
246,669 + +0.2
246,712 + +0.7
246,712 + -0.6
246,713 - +1.0
246,713 - -0.2
246,713 - +1.5
246,838 - +0.1
246,838 - -0.6
247,287 - Psest_0236 0.41 +1.1
247,305 + Psest_0236 0.42 -0.6
247,305 + Psest_0236 0.42 +0.2
247,306 - Psest_0236 0.43 -0.0
247,306 - Psest_0236 0.43 +0.1
247,306 - Psest_0236 0.43 +0.8
247,306 - Psest_0236 0.43 -0.6
247,306 - Psest_0236 0.43 +0.6
247,341 + Psest_0236 0.45 -0.0
247,341 + Psest_0236 0.45 -0.6
247,341 + Psest_0236 0.45 -2.4
247,341 + Psest_0236 0.45 +0.4
247,342 - Psest_0236 0.46 +0.6
247,342 - Psest_0236 0.46 -0.5
247,342 - Psest_0236 0.46 +0.9
247,377 + Psest_0236 0.48 +0.5
247,377 + Psest_0236 0.48 -0.6
247,377 + Psest_0236 0.48 +1.0
247,378 - Psest_0236 0.49 +0.2
247,483 - Psest_0236 0.57 +0.8
247,483 - Psest_0236 0.57 +0.1
247,532 + Psest_0236 0.61 +0.9
247,532 + Psest_0236 0.61 +0.4
247,556 + Psest_0236 0.63 -1.1
247,556 + Psest_0236 0.63 -0.1
247,557 - Psest_0236 0.63 -0.1
247,557 - Psest_0236 0.63 -2.2
247,674 + Psest_0236 0.73 -0.5
247,674 + Psest_0236 0.73 +0.6

Or see this region's nucleotide sequence