Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0826

Experiment: Lactate-nitrite; anaerobic; sample3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0824 and Psest_0825 overlap by 26 nucleotidesPsest_0825 and Psest_0826 are separated by 252 nucleotidesPsest_0826 and Psest_0827 are separated by 44 nucleotides Psest_0824: Psest_0824 - Transcriptional regulators, at 896,401 to 896,844 _0824 Psest_0825: Psest_0825 - transcriptional regulator, AsnC family, at 896,819 to 897,325 _0825 Psest_0826: Psest_0826 - Cytochrome c, at 897,578 to 898,018 _0826 Psest_0827: Psest_0827 - Nitric oxide reductase large subunit, at 898,063 to 899,487 _0827 Position (kb) 897 898 899Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 897.159 kb on - strand, within Psest_0825at 897.544 kb on + strandat 897.544 kb on + strandat 897.613 kb on + strandat 897.613 kb on + strandat 897.614 kb on - strandat 897.614 kb on - strandat 897.617 kb on + strandat 897.617 kb on + strandat 897.617 kb on + strandat 897.617 kb on + strandat 897.618 kb on - strandat 897.618 kb on - strandat 897.618 kb on - strandat 897.618 kb on - strandat 897.649 kb on - strand, within Psest_0826at 897.661 kb on + strand, within Psest_0826at 897.661 kb on + strand, within Psest_0826at 897.661 kb on + strand, within Psest_0826at 897.662 kb on - strand, within Psest_0826at 897.662 kb on - strand, within Psest_0826at 897.662 kb on - strand, within Psest_0826at 897.662 kb on - strand, within Psest_0826at 897.662 kb on - strand, within Psest_0826at 897.662 kb on - strand, within Psest_0826at 897.662 kb on - strand, within Psest_0826at 897.665 kb on + strand, within Psest_0826at 897.665 kb on + strand, within Psest_0826at 897.665 kb on + strand, within Psest_0826at 897.665 kb on + strand, within Psest_0826at 897.665 kb on + strand, within Psest_0826at 897.665 kb on + strand, within Psest_0826at 897.665 kb on + strand, within Psest_0826at 897.666 kb on - strand, within Psest_0826at 897.666 kb on - strand, within Psest_0826at 897.726 kb on + strand, within Psest_0826at 897.794 kb on + strand, within Psest_0826at 897.986 kb on - strandat 898.117 kb on + strandat 898.117 kb on + strandat 898.117 kb on + strandat 898.117 kb on + strandat 898.117 kb on + strandat 898.117 kb on + strandat 898.118 kb on - strandat 898.118 kb on - strandat 898.183 kb on + strandat 898.183 kb on + strandat 898.183 kb on + strandat 898.183 kb on + strandat 898.291 kb on + strand, within Psest_0827at 898.291 kb on + strand, within Psest_0827at 898.291 kb on + strand, within Psest_0827at 898.291 kb on + strand, within Psest_0827at 898.292 kb on - strand, within Psest_0827at 898.292 kb on - strand, within Psest_0827at 898.294 kb on + strand, within Psest_0827at 898.294 kb on + strand, within Psest_0827at 898.294 kb on + strand, within Psest_0827at 898.294 kb on + strand, within Psest_0827at 898.294 kb on + strand, within Psest_0827at 898.295 kb on - strand, within Psest_0827at 898.295 kb on - strand, within Psest_0827at 898.295 kb on - strand, within Psest_0827at 898.295 kb on - strand, within Psest_0827at 898.496 kb on + strand, within Psest_0827at 898.496 kb on + strand, within Psest_0827at 898.496 kb on + strand, within Psest_0827at 898.497 kb on - strand, within Psest_0827at 898.497 kb on - strand, within Psest_0827at 898.497 kb on - strand, within Psest_0827at 898.497 kb on - strand, within Psest_0827at 898.528 kb on + strand, within Psest_0827at 898.529 kb on - strand, within Psest_0827at 898.529 kb on - strand, within Psest_0827at 898.529 kb on - strand, within Psest_0827at 898.630 kb on + strand, within Psest_0827at 898.630 kb on + strand, within Psest_0827at 898.630 kb on + strand, within Psest_0827at 898.630 kb on + strand, within Psest_0827at 898.631 kb on - strand, within Psest_0827at 898.631 kb on - strand, within Psest_0827at 898.631 kb on - strand, within Psest_0827at 898.631 kb on - strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.660 kb on + strand, within Psest_0827at 898.661 kb on - strand, within Psest_0827at 898.661 kb on - strand, within Psest_0827at 898.661 kb on - strand, within Psest_0827at 898.661 kb on - strand, within Psest_0827at 898.661 kb on - strand, within Psest_0827at 898.661 kb on - strand, within Psest_0827at 898.661 kb on - strand, within Psest_0827at 898.661 kb on - strand, within Psest_0827at 898.661 kb on - strand, within Psest_0827at 898.661 kb on - strand, within Psest_0827at 898.661 kb on - strand, within Psest_0827at 898.661 kb on - strand, within Psest_0827at 898.661 kb on - strand, within Psest_0827at 898.663 kb on + strand, within Psest_0827at 898.663 kb on + strand, within Psest_0827at 898.663 kb on + strand, within Psest_0827at 898.664 kb on - strand, within Psest_0827at 898.664 kb on - strand, within Psest_0827at 898.664 kb on - strand, within Psest_0827at 898.786 kb on + strand, within Psest_0827at 898.786 kb on + strand, within Psest_0827at 898.787 kb on - strand, within Psest_0827at 898.787 kb on - strand, within Psest_0827

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-nitrite; anaerobic; sample3
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897,159 - Psest_0825 0.67 -0.0
897,544 + -2.4
897,544 + -3.1
897,613 + -3.5
897,613 + -3.1
897,614 - -1.2
897,614 - -2.8
897,617 + -1.0
897,617 + -4.8
897,617 + -1.0
897,617 + -4.1
897,618 - +0.6
897,618 - -2.2
897,618 - -1.3
897,618 - -2.3
897,649 - Psest_0826 0.16 +0.6
897,661 + Psest_0826 0.19 -4.2
897,661 + Psest_0826 0.19 -3.4
897,661 + Psest_0826 0.19 -2.2
897,662 - Psest_0826 0.19 -1.4
897,662 - Psest_0826 0.19 -4.0
897,662 - Psest_0826 0.19 -1.8
897,662 - Psest_0826 0.19 -3.2
897,662 - Psest_0826 0.19 -3.6
897,662 - Psest_0826 0.19 -2.2
897,662 - Psest_0826 0.19 -2.4
897,665 + Psest_0826 0.20 -2.2
897,665 + Psest_0826 0.20 -2.0
897,665 + Psest_0826 0.20 -3.8
897,665 + Psest_0826 0.20 -2.2
897,665 + Psest_0826 0.20 -3.3
897,665 + Psest_0826 0.20 -3.4
897,665 + Psest_0826 0.20 -2.5
897,666 - Psest_0826 0.20 -2.4
897,666 - Psest_0826 0.20 -3.5
897,726 + Psest_0826 0.34 -1.4
897,794 + Psest_0826 0.49 -3.4
897,986 - -2.6
898,117 + -1.4
898,117 + -2.6
898,117 + -1.4
898,117 + -0.4
898,117 + -1.8
898,117 + -1.6
898,118 - +0.6
898,118 - +0.6
898,183 + -3.0
898,183 + -0.4
898,183 + -2.0
898,183 + +0.6
898,291 + Psest_0827 0.16 -3.4
898,291 + Psest_0827 0.16 -3.9
898,291 + Psest_0827 0.16 -2.6
898,291 + Psest_0827 0.16 -4.7
898,292 - Psest_0827 0.16 -2.6
898,292 - Psest_0827 0.16 -2.9
898,294 + Psest_0827 0.16 -2.0
898,294 + Psest_0827 0.16 -1.0
898,294 + Psest_0827 0.16 -3.8
898,294 + Psest_0827 0.16 -1.8
898,294 + Psest_0827 0.16 -2.7
898,295 - Psest_0827 0.16 -3.3
898,295 - Psest_0827 0.16 -3.8
898,295 - Psest_0827 0.16 -4.0
898,295 - Psest_0827 0.16 -0.2
898,496 + Psest_0827 0.30 -3.3
898,496 + Psest_0827 0.30 -3.6
898,496 + Psest_0827 0.30 -3.4
898,497 - Psest_0827 0.30 -1.4
898,497 - Psest_0827 0.30 -2.8
898,497 - Psest_0827 0.30 -1.8
898,497 - Psest_0827 0.30 -1.2
898,528 + Psest_0827 0.33 -3.0
898,529 - Psest_0827 0.33 -3.1
898,529 - Psest_0827 0.33 -3.9
898,529 - Psest_0827 0.33 -5.6
898,630 + Psest_0827 0.40 -2.0
898,630 + Psest_0827 0.40 -1.0
898,630 + Psest_0827 0.40 -1.0
898,630 + Psest_0827 0.40 +0.6
898,631 - Psest_0827 0.40 -1.2
898,631 - Psest_0827 0.40 -3.0
898,631 - Psest_0827 0.40 -2.4
898,631 - Psest_0827 0.40 -1.0
898,660 + Psest_0827 0.42 -1.0
898,660 + Psest_0827 0.42 -2.6
898,660 + Psest_0827 0.42 -2.0
898,660 + Psest_0827 0.42 -2.5
898,660 + Psest_0827 0.42 -1.6
898,660 + Psest_0827 0.42 -2.8
898,660 + Psest_0827 0.42 -2.1
898,660 + Psest_0827 0.42 -3.1
898,660 + Psest_0827 0.42 -3.6
898,660 + Psest_0827 0.42 -4.5
898,660 + Psest_0827 0.42 -3.3
898,660 + Psest_0827 0.42 -2.8
898,660 + Psest_0827 0.42 -3.9
898,660 + Psest_0827 0.42 -3.8
898,660 + Psest_0827 0.42 -2.4
898,660 + Psest_0827 0.42 -2.0
898,660 + Psest_0827 0.42 -1.4
898,660 + Psest_0827 0.42 -3.2
898,660 + Psest_0827 0.42 -1.0
898,660 + Psest_0827 0.42 -2.1
898,661 - Psest_0827 0.42 -4.0
898,661 - Psest_0827 0.42 -3.8
898,661 - Psest_0827 0.42 -1.1
898,661 - Psest_0827 0.42 -2.2
898,661 - Psest_0827 0.42 -4.0
898,661 - Psest_0827 0.42 -2.2
898,661 - Psest_0827 0.42 -1.8
898,661 - Psest_0827 0.42 -2.6
898,661 - Psest_0827 0.42 -2.9
898,661 - Psest_0827 0.42 -3.0
898,661 - Psest_0827 0.42 -5.0
898,661 - Psest_0827 0.42 -2.4
898,661 - Psest_0827 0.42 -2.6
898,663 + Psest_0827 0.42 -1.4
898,663 + Psest_0827 0.42 -1.6
898,663 + Psest_0827 0.42 -3.8
898,664 - Psest_0827 0.42 -3.0
898,664 - Psest_0827 0.42 -0.4
898,664 - Psest_0827 0.42 -2.0
898,786 + Psest_0827 0.51 -3.5
898,786 + Psest_0827 0.51 -3.5
898,787 - Psest_0827 0.51 -3.2
898,787 - Psest_0827 0.51 -2.3

Or see this region's nucleotide sequence