Experiment: Lactate-nitrite; anaerobic; sample3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0590 and Psest_0591 are separated by 105 nucleotides Psest_0591 and Psest_0592 are separated by 90 nucleotides Psest_0592 and Psest_0593 are separated by 23 nucleotides Psest_0593 and Psest_0594 are separated by 32 nucleotides
Psest_0590: Psest_0590 - hypothetical protein, at 640,338 to 642,005
_0590
Psest_0591: Psest_0591 - heavy metal sensor kinase, at 642,111 to 643,484
_0591
Psest_0592: Psest_0592 - hypothetical protein, at 643,575 to 643,805
_0592
Psest_0593: Psest_0593 - Protein of unknown function (DUF2933)., at 643,829 to 644,086
_0593
Psest_0594: Psest_0594 - hypothetical protein, at 644,119 to 644,436
_0594
Position (kb) 642
643
644 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 641.176 kb on + strand, within Psest_0590 at 641.177 kb on - strand, within Psest_0590 at 641.219 kb on - strand, within Psest_0590 at 641.257 kb on + strand, within Psest_0590 at 641.257 kb on + strand, within Psest_0590 at 641.278 kb on + strand, within Psest_0590 at 641.278 kb on + strand, within Psest_0590 at 641.279 kb on - strand, within Psest_0590 at 641.279 kb on - strand, within Psest_0590 at 641.279 kb on - strand, within Psest_0590 at 641.353 kb on - strand, within Psest_0590 at 641.414 kb on - strand, within Psest_0590 at 641.414 kb on - strand, within Psest_0590 at 641.478 kb on - strand, within Psest_0590 at 641.498 kb on + strand, within Psest_0590 at 641.499 kb on - strand, within Psest_0590 at 641.557 kb on - strand, within Psest_0590 at 641.574 kb on - strand, within Psest_0590 at 641.574 kb on - strand, within Psest_0590 at 641.574 kb on - strand, within Psest_0590 at 641.574 kb on - strand, within Psest_0590 at 641.595 kb on + strand, within Psest_0590 at 641.595 kb on + strand, within Psest_0590 at 641.595 kb on + strand, within Psest_0590 at 641.596 kb on - strand, within Psest_0590 at 641.602 kb on - strand, within Psest_0590 at 641.602 kb on - strand, within Psest_0590 at 641.602 kb on - strand, within Psest_0590 at 641.629 kb on - strand, within Psest_0590 at 641.717 kb on + strand, within Psest_0590 at 641.718 kb on - strand, within Psest_0590 at 641.718 kb on - strand, within Psest_0590 at 641.868 kb on + strand at 641.868 kb on + strand at 641.913 kb on + strand at 641.931 kb on + strand at 641.931 kb on + strand at 641.932 kb on - strand at 641.932 kb on - strand at 641.932 kb on - strand at 641.932 kb on - strand at 641.937 kb on + strand at 641.976 kb on - strand at 642.027 kb on + strand at 642.027 kb on + strand at 642.027 kb on + strand at 642.027 kb on + strand at 642.027 kb on + strand at 642.027 kb on + strand at 642.027 kb on + strand at 642.027 kb on + strand at 642.027 kb on + strand at 642.027 kb on + strand at 642.027 kb on + strand at 642.027 kb on + strand at 642.027 kb on + strand at 642.027 kb on + strand at 642.027 kb on + strand at 642.027 kb on + strand at 642.027 kb on + strand at 642.027 kb on + strand at 642.028 kb on - strand at 642.028 kb on - strand at 642.028 kb on - strand at 642.028 kb on - strand at 642.028 kb on - strand at 642.028 kb on - strand at 642.028 kb on - strand at 642.028 kb on - strand at 642.028 kb on - strand at 642.028 kb on - strand at 642.028 kb on - strand at 642.028 kb on - strand at 642.028 kb on - strand at 642.028 kb on - strand at 642.028 kb on - strand at 642.028 kb on - strand at 642.028 kb on - strand at 642.073 kb on + strand at 642.074 kb on - strand at 642.074 kb on - strand at 642.074 kb on - strand at 642.074 kb on - strand at 642.074 kb on - strand at 642.074 kb on - strand at 642.074 kb on - strand at 642.081 kb on + strand at 642.081 kb on + strand at 642.082 kb on - strand at 642.082 kb on - strand at 642.082 kb on - strand at 642.082 kb on - strand at 642.082 kb on - strand at 642.082 kb on - strand at 642.082 kb on - strand at 642.082 kb on - strand at 642.122 kb on + strand at 642.122 kb on + strand at 642.122 kb on + strand at 642.122 kb on + strand at 642.122 kb on + strand at 642.122 kb on + strand at 642.122 kb on + strand at 642.122 kb on + strand at 642.122 kb on + strand at 642.122 kb on + strand at 642.122 kb on + strand at 642.122 kb on + strand at 642.122 kb on + strand at 642.122 kb on + strand at 642.123 kb on - strand at 642.123 kb on - strand at 642.123 kb on - strand at 642.123 kb on - strand at 642.123 kb on - strand at 642.123 kb on - strand at 642.123 kb on - strand at 642.123 kb on - strand at 642.123 kb on - strand at 642.152 kb on + strand at 642.201 kb on + strand at 642.215 kb on + strand at 642.215 kb on + strand at 642.216 kb on - strand at 642.274 kb on + strand, within Psest_0591 at 642.274 kb on + strand, within Psest_0591 at 642.275 kb on - strand, within Psest_0591 at 642.366 kb on + strand, within Psest_0591 at 642.366 kb on + strand, within Psest_0591 at 642.366 kb on + strand, within Psest_0591 at 642.366 kb on + strand, within Psest_0591 at 642.367 kb on - strand, within Psest_0591 at 642.367 kb on - strand, within Psest_0591 at 642.400 kb on + strand, within Psest_0591 at 642.420 kb on + strand, within Psest_0591 at 642.420 kb on + strand, within Psest_0591 at 642.420 kb on + strand, within Psest_0591 at 642.420 kb on + strand, within Psest_0591 at 642.420 kb on + strand, within Psest_0591 at 642.421 kb on - strand, within Psest_0591 at 642.421 kb on - strand, within Psest_0591 at 642.421 kb on - strand, within Psest_0591 at 642.492 kb on + strand, within Psest_0591 at 642.520 kb on + strand, within Psest_0591 at 642.520 kb on + strand, within Psest_0591 at 642.521 kb on - strand, within Psest_0591 at 642.521 kb on - strand, within Psest_0591 at 642.578 kb on + strand, within Psest_0591 at 642.578 kb on + strand, within Psest_0591 at 642.609 kb on + strand, within Psest_0591 at 642.609 kb on + strand, within Psest_0591 at 642.609 kb on + strand, within Psest_0591 at 642.609 kb on + strand, within Psest_0591 at 642.610 kb on - strand, within Psest_0591 at 642.610 kb on - strand, within Psest_0591 at 642.610 kb on - strand, within Psest_0591 at 642.641 kb on + strand, within Psest_0591 at 642.642 kb on - strand, within Psest_0591 at 642.642 kb on - strand, within Psest_0591 at 642.662 kb on - strand, within Psest_0591 at 642.676 kb on + strand, within Psest_0591 at 642.748 kb on - strand, within Psest_0591 at 642.878 kb on + strand, within Psest_0591 at 642.928 kb on - strand, within Psest_0591 at 642.998 kb on + strand, within Psest_0591 at 643.064 kb on - strand, within Psest_0591 at 643.067 kb on + strand, within Psest_0591 at 643.068 kb on - strand, within Psest_0591 at 643.087 kb on - strand, within Psest_0591 at 643.098 kb on + strand, within Psest_0591 at 643.098 kb on + strand, within Psest_0591 at 643.109 kb on + strand, within Psest_0591 at 643.220 kb on + strand, within Psest_0591 at 643.220 kb on + strand, within Psest_0591 at 643.227 kb on + strand, within Psest_0591 at 643.227 kb on + strand, within Psest_0591 at 643.228 kb on - strand, within Psest_0591 at 643.230 kb on + strand, within Psest_0591 at 643.231 kb on - strand, within Psest_0591 at 643.231 kb on - strand, within Psest_0591 at 643.317 kb on + strand, within Psest_0591 at 643.322 kb on + strand, within Psest_0591 at 643.322 kb on + strand, within Psest_0591 at 643.322 kb on + strand, within Psest_0591 at 643.322 kb on + strand, within Psest_0591 at 643.322 kb on + strand, within Psest_0591 at 643.322 kb on + strand, within Psest_0591 at 643.330 kb on - strand, within Psest_0591 at 643.489 kb on - strand at 643.489 kb on - strand at 643.558 kb on - strand at 643.571 kb on + strand at 643.572 kb on - strand at 643.572 kb on - strand at 643.572 kb on - strand at 643.576 kb on + strand at 643.577 kb on - strand at 643.577 kb on - strand at 643.577 kb on - strand at 643.682 kb on + strand, within Psest_0592 at 643.733 kb on + strand, within Psest_0592 at 643.733 kb on + strand, within Psest_0592 at 643.734 kb on - strand, within Psest_0592 at 643.809 kb on - strand at 643.809 kb on - strand at 643.903 kb on + strand, within Psest_0593 at 643.903 kb on + strand, within Psest_0593 at 643.903 kb on + strand, within Psest_0593 at 643.903 kb on + strand, within Psest_0593 at 643.903 kb on + strand, within Psest_0593 at 643.903 kb on + strand, within Psest_0593 at 643.903 kb on + strand, within Psest_0593 at 643.903 kb on + strand, within Psest_0593 at 643.903 kb on + strand, within Psest_0593 at 643.903 kb on + strand, within Psest_0593 at 643.903 kb on + strand, within Psest_0593 at 643.904 kb on - strand, within Psest_0593 at 643.904 kb on - strand, within Psest_0593 at 643.904 kb on - strand, within Psest_0593 at 643.904 kb on - strand, within Psest_0593 at 643.904 kb on - strand, within Psest_0593 at 643.904 kb on - strand, within Psest_0593 at 643.904 kb on - strand, within Psest_0593 at 643.904 kb on - strand, within Psest_0593 at 643.904 kb on - strand, within Psest_0593 at 643.904 kb on - strand, within Psest_0593 at 643.916 kb on + strand, within Psest_0593 at 644.005 kb on - strand, within Psest_0593 at 644.076 kb on - strand at 644.088 kb on + strand at 644.088 kb on + strand at 644.089 kb on - strand at 644.093 kb on - strand at 644.106 kb on + strand at 644.107 kb on - strand at 644.107 kb on - strand at 644.164 kb on - strand, within Psest_0594 at 644.201 kb on + strand, within Psest_0594 at 644.202 kb on - strand, within Psest_0594 at 644.221 kb on - strand, within Psest_0594 at 644.221 kb on - strand, within Psest_0594 at 644.226 kb on + strand, within Psest_0594 at 644.226 kb on + strand, within Psest_0594 at 644.226 kb on + strand, within Psest_0594 at 644.228 kb on + strand, within Psest_0594 at 644.228 kb on + strand, within Psest_0594 at 644.307 kb on + strand, within Psest_0594 at 644.307 kb on + strand, within Psest_0594 at 644.339 kb on - strand, within Psest_0594 at 644.339 kb on - strand, within Psest_0594 at 644.352 kb on + strand, within Psest_0594 at 644.352 kb on + strand, within Psest_0594 at 644.403 kb on + strand, within Psest_0594 at 644.455 kb on - strand at 644.467 kb on + strand at 644.467 kb on + strand at 644.468 kb on - strand at 644.484 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrite; anaerobic; sample3 remove 641,176 + Psest_0590 0.50 -1.2 641,177 - Psest_0590 0.50 +1.4 641,219 - Psest_0590 0.53 -0.7 641,257 + Psest_0590 0.55 -2.7 641,257 + Psest_0590 0.55 -0.7 641,278 + Psest_0590 0.56 +0.0 641,278 + Psest_0590 0.56 -0.5 641,279 - Psest_0590 0.56 +0.7 641,279 - Psest_0590 0.56 -0.7 641,279 - Psest_0590 0.56 -0.6 641,353 - Psest_0590 0.61 +0.9 641,414 - Psest_0590 0.65 +0.6 641,414 - Psest_0590 0.65 +1.1 641,478 - Psest_0590 0.68 -0.8 641,498 + Psest_0590 0.70 -0.3 641,499 - Psest_0590 0.70 +0.0 641,557 - Psest_0590 0.73 -0.5 641,574 - Psest_0590 0.74 -1.0 641,574 - Psest_0590 0.74 -0.7 641,574 - Psest_0590 0.74 +0.2 641,574 - Psest_0590 0.74 -0.3 641,595 + Psest_0590 0.75 -1.0 641,595 + Psest_0590 0.75 -0.6 641,595 + Psest_0590 0.75 -2.1 641,596 - Psest_0590 0.75 -1.7 641,602 - Psest_0590 0.76 +0.6 641,602 - Psest_0590 0.76 +0.0 641,602 - Psest_0590 0.76 -1.4 641,629 - Psest_0590 0.77 +1.0 641,717 + Psest_0590 0.83 -0.8 641,718 - Psest_0590 0.83 -0.1 641,718 - Psest_0590 0.83 -1.0 641,868 + +0.1 641,868 + -0.2 641,913 + -0.1 641,931 + -1.0 641,931 + -1.0 641,932 - +0.2 641,932 - -2.0 641,932 - +0.1 641,932 - -0.9 641,937 + -1.0 641,976 - -0.5 642,027 + -0.7 642,027 + +0.5 642,027 + -0.6 642,027 + -0.1 642,027 + +1.6 642,027 + -0.4 642,027 + +1.0 642,027 + -0.7 642,027 + +1.6 642,027 + +0.3 642,027 + -0.7 642,027 + -0.4 642,027 + -0.6 642,027 + -1.7 642,027 + +0.0 642,027 + -1.0 642,027 + +0.5 642,027 + -0.2 642,028 - -0.1 642,028 - -0.7 642,028 - +1.1 642,028 - -1.8 642,028 - -0.2 642,028 - -2.4 642,028 - +0.8 642,028 - +0.1 642,028 - +0.2 642,028 - +1.2 642,028 - -0.6 642,028 - +1.7 642,028 - -2.9 642,028 - +0.4 642,028 - -0.6 642,028 - -0.7 642,028 - -0.9 642,073 + -0.3 642,074 - +1.0 642,074 - +0.8 642,074 - -0.3 642,074 - +0.4 642,074 - +0.8 642,074 - +0.9 642,074 - +0.4 642,081 + +2.0 642,081 + -0.6 642,082 - -0.7 642,082 - -0.9 642,082 - -0.7 642,082 - -0.4 642,082 - -1.2 642,082 - -0.6 642,082 - +0.3 642,082 - -0.2 642,122 + +0.0 642,122 + +1.7 642,122 + +0.1 642,122 + +0.1 642,122 + +0.8 642,122 + +0.1 642,122 + -1.4 642,122 + +0.1 642,122 + +0.6 642,122 + -1.1 642,122 + +0.6 642,122 + -1.0 642,122 + -0.6 642,122 + +0.9 642,123 - +1.3 642,123 - +0.5 642,123 - -0.8 642,123 - +1.2 642,123 - -2.0 642,123 - +0.6 642,123 - +0.3 642,123 - +0.5 642,123 - -0.3 642,152 + -0.5 642,201 + +0.6 642,215 + +0.9 642,215 + +0.6 642,216 - -0.1 642,274 + Psest_0591 0.12 -1.2 642,274 + Psest_0591 0.12 -2.8 642,275 - Psest_0591 0.12 -1.4 642,366 + Psest_0591 0.19 -3.0 642,366 + Psest_0591 0.19 -0.3 642,366 + Psest_0591 0.19 -2.6 642,366 + Psest_0591 0.19 -1.2 642,367 - Psest_0591 0.19 -0.3 642,367 - Psest_0591 0.19 +0.3 642,400 + Psest_0591 0.21 +1.3 642,420 + Psest_0591 0.22 +0.4 642,420 + Psest_0591 0.22 -0.8 642,420 + Psest_0591 0.22 +0.8 642,420 + Psest_0591 0.22 +0.2 642,420 + Psest_0591 0.22 -0.2 642,421 - Psest_0591 0.23 -0.1 642,421 - Psest_0591 0.23 -1.2 642,421 - Psest_0591 0.23 -0.3 642,492 + Psest_0591 0.28 -1.0 642,520 + Psest_0591 0.30 -0.8 642,520 + Psest_0591 0.30 -1.3 642,521 - Psest_0591 0.30 -0.3 642,521 - Psest_0591 0.30 +0.8 642,578 + Psest_0591 0.34 -0.4 642,578 + Psest_0591 0.34 +0.5 642,609 + Psest_0591 0.36 -0.2 642,609 + Psest_0591 0.36 -0.3 642,609 + Psest_0591 0.36 -0.4 642,609 + Psest_0591 0.36 +0.2 642,610 - Psest_0591 0.36 -1.0 642,610 - Psest_0591 0.36 -0.6 642,610 - Psest_0591 0.36 -0.8 642,641 + Psest_0591 0.39 -2.2 642,642 - Psest_0591 0.39 -0.3 642,642 - Psest_0591 0.39 -1.0 642,662 - Psest_0591 0.40 -0.8 642,676 + Psest_0591 0.41 +0.1 642,748 - Psest_0591 0.46 +0.7 642,878 + Psest_0591 0.56 +0.3 642,928 - Psest_0591 0.59 +0.2 642,998 + Psest_0591 0.65 -0.9 643,064 - Psest_0591 0.69 -0.1 643,067 + Psest_0591 0.70 -0.9 643,068 - Psest_0591 0.70 +1.6 643,087 - Psest_0591 0.71 -1.1 643,098 + Psest_0591 0.72 +2.8 643,098 + Psest_0591 0.72 +0.6 643,109 + Psest_0591 0.73 +0.1 643,220 + Psest_0591 0.81 -1.0 643,220 + Psest_0591 0.81 -0.4 643,227 + Psest_0591 0.81 -0.0 643,227 + Psest_0591 0.81 +0.1 643,228 - Psest_0591 0.81 -0.6 643,230 + Psest_0591 0.81 -0.8 643,231 - Psest_0591 0.82 -1.2 643,231 - Psest_0591 0.82 +0.5 643,317 + Psest_0591 0.88 +0.1 643,322 + Psest_0591 0.88 +1.0 643,322 + Psest_0591 0.88 -0.2 643,322 + Psest_0591 0.88 -0.5 643,322 + Psest_0591 0.88 -1.4 643,322 + Psest_0591 0.88 -0.5 643,322 + Psest_0591 0.88 +0.4 643,330 - Psest_0591 0.89 +0.2 643,489 - -0.1 643,489 - -1.0 643,558 - +0.1 643,571 + -0.4 643,572 - +0.7 643,572 - -0.7 643,572 - -0.4 643,576 + -1.6 643,577 - +0.9 643,577 - -0.7 643,577 - -1.4 643,682 + Psest_0592 0.46 -0.4 643,733 + Psest_0592 0.68 +0.6 643,733 + Psest_0592 0.68 -0.4 643,734 - Psest_0592 0.69 -0.7 643,809 - -0.9 643,809 - +0.6 643,903 + Psest_0593 0.29 +0.0 643,903 + Psest_0593 0.29 +0.8 643,903 + Psest_0593 0.29 -2.4 643,903 + Psest_0593 0.29 -1.7 643,903 + Psest_0593 0.29 +1.3 643,903 + Psest_0593 0.29 -2.0 643,903 + Psest_0593 0.29 -1.4 643,903 + Psest_0593 0.29 -1.0 643,903 + Psest_0593 0.29 +0.6 643,903 + Psest_0593 0.29 -1.7 643,903 + Psest_0593 0.29 -1.4 643,904 - Psest_0593 0.29 +0.7 643,904 - Psest_0593 0.29 +0.3 643,904 - Psest_0593 0.29 -0.9 643,904 - Psest_0593 0.29 -0.6 643,904 - Psest_0593 0.29 +1.9 643,904 - Psest_0593 0.29 -1.6 643,904 - Psest_0593 0.29 +0.7 643,904 - Psest_0593 0.29 -0.7 643,904 - Psest_0593 0.29 +0.1 643,904 - Psest_0593 0.29 -0.1 643,916 + Psest_0593 0.34 -1.9 644,005 - Psest_0593 0.68 -0.7 644,076 - +0.1 644,088 + -0.9 644,088 + +0.3 644,089 - -1.8 644,093 - +0.7 644,106 + +0.5 644,107 - -1.5 644,107 - -0.7 644,164 - Psest_0594 0.14 -0.7 644,201 + Psest_0594 0.26 +0.4 644,202 - Psest_0594 0.26 +0.3 644,221 - Psest_0594 0.32 +2.6 644,221 - Psest_0594 0.32 +0.2 644,226 + Psest_0594 0.34 -2.0 644,226 + Psest_0594 0.34 +0.7 644,226 + Psest_0594 0.34 -0.4 644,228 + Psest_0594 0.34 +0.6 644,228 + Psest_0594 0.34 -0.3 644,307 + Psest_0594 0.59 +0.6 644,307 + Psest_0594 0.59 -1.0 644,339 - Psest_0594 0.69 -0.6 644,339 - Psest_0594 0.69 +0.2 644,352 + Psest_0594 0.73 -1.2 644,352 + Psest_0594 0.73 +0.4 644,403 + Psest_0594 0.89 -0.5 644,455 - -2.0 644,467 + +0.9 644,467 + -0.6 644,468 - +1.2 644,484 - -1.7
Or see this region's nucleotide sequence