Experiment: Lactate-nitrite; anaerobic; sample3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0347 and Psest_0348 are separated by 97 nucleotides Psest_0348 and Psest_0349 are separated by 178 nucleotides Psest_0349 and Psest_0350 overlap by 4 nucleotides
Psest_0347: Psest_0347 - large component of pyruvate/D-alanine transporter (actP-like) <small>(from data)</small>, at 370,231 to 372,000
_0347
Psest_0348: Psest_0348 - hypothetical protein, at 372,098 to 372,616
_0348
Psest_0349: Psest_0349 - DNA polymerase III, alpha subunit (gram-positive type), at 372,795 to 373,502
_0349
Psest_0350: Psest_0350 - Predicted signal-transduction protein containing cAMP-binding and CBS domains, at 373,499 to 375,433
_0350
Position (kb) 372
373
374 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 371.899 kb on + strand at 371.998 kb on + strand at 372.005 kb on + strand at 372.005 kb on + strand at 372.005 kb on + strand at 372.048 kb on + strand at 372.048 kb on + strand at 372.048 kb on + strand at 372.048 kb on + strand at 372.048 kb on + strand at 372.048 kb on + strand at 372.048 kb on + strand at 372.049 kb on - strand at 372.049 kb on - strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.095 kb on + strand at 372.096 kb on - strand at 372.096 kb on - strand at 372.096 kb on - strand at 372.096 kb on - strand at 372.096 kb on - strand at 372.096 kb on - strand at 372.096 kb on - strand at 372.096 kb on - strand at 372.096 kb on - strand at 372.096 kb on - strand at 372.096 kb on - strand at 372.096 kb on - strand at 372.096 kb on - strand at 372.096 kb on - strand at 372.096 kb on - strand at 372.096 kb on - strand at 372.096 kb on - strand at 372.096 kb on - strand at 372.096 kb on - strand at 372.096 kb on - strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.097 kb on + strand at 372.098 kb on - strand at 372.098 kb on - strand at 372.098 kb on - strand at 372.098 kb on - strand at 372.098 kb on - strand at 372.098 kb on - strand at 372.098 kb on - strand at 372.098 kb on - strand at 372.098 kb on - strand at 372.098 kb on - strand at 372.098 kb on - strand at 372.098 kb on - strand at 372.098 kb on - strand at 372.098 kb on - strand at 372.098 kb on - strand at 372.111 kb on + strand at 372.111 kb on + strand at 372.111 kb on + strand at 372.112 kb on - strand at 372.112 kb on - strand at 372.112 kb on - strand at 372.112 kb on - strand at 372.179 kb on - strand, within Psest_0348 at 372.233 kb on + strand, within Psest_0348 at 372.233 kb on + strand, within Psest_0348 at 372.234 kb on - strand, within Psest_0348 at 372.234 kb on - strand, within Psest_0348 at 372.234 kb on - strand, within Psest_0348 at 372.246 kb on - strand, within Psest_0348 at 372.368 kb on + strand, within Psest_0348 at 372.368 kb on + strand, within Psest_0348 at 372.368 kb on + strand, within Psest_0348 at 372.370 kb on + strand, within Psest_0348 at 372.370 kb on + strand, within Psest_0348 at 372.370 kb on + strand, within Psest_0348 at 372.371 kb on - strand, within Psest_0348 at 372.371 kb on - strand, within Psest_0348 at 372.587 kb on + strand at 372.587 kb on + strand at 372.588 kb on - strand at 372.595 kb on + strand at 372.596 kb on - strand at 372.596 kb on - strand at 372.596 kb on - strand at 372.618 kb on + strand at 372.618 kb on + strand at 372.618 kb on + strand at 372.618 kb on + strand at 372.618 kb on + strand at 372.618 kb on + strand at 372.618 kb on + strand at 372.760 kb on - strand at 372.760 kb on - strand at 372.760 kb on - strand at 372.959 kb on + strand, within Psest_0349 at 372.973 kb on + strand, within Psest_0349 at 372.973 kb on + strand, within Psest_0349 at 372.973 kb on + strand, within Psest_0349 at 372.974 kb on - strand, within Psest_0349 at 373.023 kb on + strand, within Psest_0349 at 373.023 kb on + strand, within Psest_0349 at 373.023 kb on + strand, within Psest_0349 at 373.024 kb on - strand, within Psest_0349 at 373.024 kb on - strand, within Psest_0349 at 373.024 kb on - strand, within Psest_0349 at 373.024 kb on - strand, within Psest_0349 at 373.024 kb on - strand, within Psest_0349 at 373.289 kb on - strand, within Psest_0349 at 373.384 kb on - strand, within Psest_0349 at 373.496 kb on + strand at 373.496 kb on + strand at 373.496 kb on + strand at 373.496 kb on + strand at 373.496 kb on + strand at 373.496 kb on + strand at 373.496 kb on + strand at 373.496 kb on + strand at 373.496 kb on + strand at 373.496 kb on + strand at 373.497 kb on - strand at 373.497 kb on - strand at 373.497 kb on - strand at 373.497 kb on - strand at 373.497 kb on - strand at 373.497 kb on - strand at 373.497 kb on - strand at 373.497 kb on - strand at 373.497 kb on - strand at 373.502 kb on + strand at 373.502 kb on + strand at 373.502 kb on + strand at 373.502 kb on + strand at 373.502 kb on + strand at 373.502 kb on + strand at 373.502 kb on + strand at 373.502 kb on + strand at 373.502 kb on + strand at 373.502 kb on + strand at 373.502 kb on + strand at 373.677 kb on + strand at 373.677 kb on + strand at 373.677 kb on + strand at 374.025 kb on + strand, within Psest_0350 at 374.025 kb on + strand, within Psest_0350 at 374.025 kb on + strand, within Psest_0350 at 374.025 kb on + strand, within Psest_0350 at 374.025 kb on + strand, within Psest_0350 at 374.025 kb on + strand, within Psest_0350 at 374.026 kb on - strand, within Psest_0350 at 374.026 kb on - strand, within Psest_0350 at 374.026 kb on - strand, within Psest_0350 at 374.026 kb on - strand, within Psest_0350 at 374.026 kb on - strand, within Psest_0350 at 374.026 kb on - strand, within Psest_0350 at 374.026 kb on - strand, within Psest_0350 at 374.026 kb on - strand, within Psest_0350 at 374.274 kb on + strand, within Psest_0350 at 374.275 kb on - strand, within Psest_0350
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrite; anaerobic; sample3 remove 371,899 + +0.6 371,998 + +0.1 372,005 + -0.4 372,005 + +0.5 372,005 + -0.2 372,048 + +0.2 372,048 + +2.3 372,048 + -0.7 372,048 + +0.9 372,048 + -0.9 372,048 + -0.6 372,048 + -0.5 372,049 - -2.3 372,049 - -2.5 372,095 + -1.0 372,095 + -0.1 372,095 + +0.0 372,095 + -0.8 372,095 + -0.4 372,095 + +0.6 372,095 + -0.4 372,095 + +1.3 372,095 + -2.2 372,095 + +1.3 372,095 + +0.0 372,095 + +0.4 372,095 + +0.8 372,095 + -1.0 372,095 + -1.7 372,095 + +0.8 372,095 + +0.1 372,095 + -1.4 372,095 + +0.2 372,095 + +0.2 372,095 + +0.1 372,095 + +0.2 372,095 + -0.4 372,095 + -1.0 372,095 + -0.9 372,095 + -0.6 372,095 + +0.2 372,095 + -0.5 372,095 + -0.7 372,095 + +1.6 372,095 + -0.3 372,095 + +0.6 372,095 + -0.4 372,096 - -0.3 372,096 - -0.7 372,096 - +0.0 372,096 - -0.2 372,096 - -0.7 372,096 - +1.5 372,096 - +1.2 372,096 - +0.3 372,096 - +0.8 372,096 - -1.2 372,096 - +0.6 372,096 - +0.7 372,096 - -0.5 372,096 - +0.0 372,096 - +1.4 372,096 - +0.8 372,096 - +0.6 372,096 - +0.9 372,096 - +0.6 372,096 - +1.3 372,097 + -0.1 372,097 + +0.1 372,097 + -3.0 372,097 + +0.6 372,097 + +0.3 372,097 + -0.3 372,097 + -0.5 372,097 + -0.3 372,097 + +0.3 372,097 + +0.4 372,097 + -0.1 372,097 + +0.6 372,097 + +1.0 372,097 + +0.7 372,097 + -0.5 372,097 + +1.8 372,097 + +1.5 372,097 + +1.6 372,097 + -0.4 372,097 + +0.4 372,097 + +0.6 372,097 + -0.5 372,098 - +0.6 372,098 - +0.5 372,098 - +0.4 372,098 - -0.1 372,098 - +2.0 372,098 - -0.6 372,098 - +1.5 372,098 - +0.0 372,098 - -0.1 372,098 - -0.3 372,098 - -2.1 372,098 - -0.6 372,098 - -2.4 372,098 - -1.8 372,098 - -1.7 372,111 + +0.0 372,111 + -2.0 372,111 + +0.3 372,112 - -0.1 372,112 - +0.6 372,112 - -0.4 372,112 - -1.0 372,179 - Psest_0348 0.16 -0.7 372,233 + Psest_0348 0.26 +2.2 372,233 + Psest_0348 0.26 -0.2 372,234 - Psest_0348 0.26 -0.1 372,234 - Psest_0348 0.26 +0.6 372,234 - Psest_0348 0.26 +0.2 372,246 - Psest_0348 0.29 +1.0 372,368 + Psest_0348 0.52 -0.2 372,368 + Psest_0348 0.52 -0.6 372,368 + Psest_0348 0.52 -1.0 372,370 + Psest_0348 0.52 -0.8 372,370 + Psest_0348 0.52 +0.9 372,370 + Psest_0348 0.52 -0.3 372,371 - Psest_0348 0.53 -0.8 372,371 - Psest_0348 0.53 +0.3 372,587 + +0.2 372,587 + +0.8 372,588 - +0.1 372,595 + +1.4 372,596 - +0.8 372,596 - -0.3 372,596 - -0.5 372,618 + -0.4 372,618 + +0.9 372,618 + +0.9 372,618 + -0.7 372,618 + +0.3 372,618 + +1.6 372,618 + -0.3 372,760 - +0.4 372,760 - -1.5 372,760 - +2.2 372,959 + Psest_0349 0.23 -0.6 372,973 + Psest_0349 0.25 -1.6 372,973 + Psest_0349 0.25 -1.4 372,973 + Psest_0349 0.25 -1.5 372,974 - Psest_0349 0.25 +0.6 373,023 + Psest_0349 0.32 +0.0 373,023 + Psest_0349 0.32 -2.1 373,023 + Psest_0349 0.32 +1.0 373,024 - Psest_0349 0.32 -0.0 373,024 - Psest_0349 0.32 -1.6 373,024 - Psest_0349 0.32 -1.3 373,024 - Psest_0349 0.32 +0.0 373,024 - Psest_0349 0.32 -0.2 373,289 - Psest_0349 0.70 -1.1 373,384 - Psest_0349 0.83 -2.5 373,496 + +0.9 373,496 + +0.1 373,496 + -0.8 373,496 + +0.2 373,496 + -0.3 373,496 + +0.0 373,496 + -0.1 373,496 + +0.5 373,496 + +0.1 373,496 + -0.9 373,497 - -0.2 373,497 - +0.4 373,497 - +0.6 373,497 - +0.2 373,497 - -0.8 373,497 - -0.5 373,497 - +0.7 373,497 - +0.0 373,497 - -0.8 373,502 + +1.4 373,502 + +1.1 373,502 + +0.0 373,502 + +0.4 373,502 + -1.2 373,502 + -0.5 373,502 + +0.8 373,502 + -1.1 373,502 + +0.6 373,502 + -0.2 373,502 + +1.3 373,677 + -0.1 373,677 + +1.3 373,677 + +0.4 374,025 + Psest_0350 0.27 -0.7 374,025 + Psest_0350 0.27 -0.4 374,025 + Psest_0350 0.27 +0.4 374,025 + Psest_0350 0.27 +0.6 374,025 + Psest_0350 0.27 -1.0 374,025 + Psest_0350 0.27 +0.1 374,026 - Psest_0350 0.27 +1.6 374,026 - Psest_0350 0.27 +0.4 374,026 - Psest_0350 0.27 -0.1 374,026 - Psest_0350 0.27 -0.8 374,026 - Psest_0350 0.27 -0.5 374,026 - Psest_0350 0.27 -1.0 374,026 - Psest_0350 0.27 +0.6 374,026 - Psest_0350 0.27 +0.1 374,274 + Psest_0350 0.40 +0.4 374,275 - Psest_0350 0.40 +0.0
Or see this region's nucleotide sequence