Experiment: Lactate-nitrite; anaerobic; sample2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0800 and Psest_0801 are separated by 336 nucleotides Psest_0801 and Psest_0802 are separated by 10 nucleotides Psest_0802 and Psest_0803 are separated by 70 nucleotides
Psest_0800: Psest_0800 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 874,734 to 875,477
_0800
Psest_0801: Psest_0801 - CBS-domain-containing membrane protein, at 875,814 to 876,950
_0801
Psest_0802: Psest_0802 - Transcriptional regulator, at 876,961 to 877,821
_0802
Psest_0803: Psest_0803 - prepilin-type N-terminal cleavage/methylation domain, at 877,892 to 878,419
_0803
Position (kb) 875
876
877 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 875.078 kb on + strand, within Psest_0800 at 875.078 kb on + strand, within Psest_0800 at 875.079 kb on - strand, within Psest_0800 at 875.175 kb on + strand, within Psest_0800 at 875.175 kb on + strand, within Psest_0800 at 875.175 kb on + strand, within Psest_0800 at 875.175 kb on + strand, within Psest_0800 at 875.175 kb on + strand, within Psest_0800 at 875.175 kb on + strand, within Psest_0800 at 875.175 kb on + strand, within Psest_0800 at 875.175 kb on + strand, within Psest_0800 at 875.176 kb on - strand, within Psest_0800 at 875.176 kb on - strand, within Psest_0800 at 875.176 kb on - strand, within Psest_0800 at 875.176 kb on - strand, within Psest_0800 at 875.176 kb on - strand, within Psest_0800 at 875.176 kb on - strand, within Psest_0800 at 875.178 kb on - strand, within Psest_0800 at 875.249 kb on + strand, within Psest_0800 at 875.465 kb on + strand at 875.465 kb on + strand at 875.465 kb on + strand at 875.465 kb on + strand at 875.465 kb on + strand at 875.465 kb on + strand at 875.466 kb on - strand at 875.466 kb on - strand at 875.466 kb on - strand at 875.466 kb on - strand at 875.466 kb on - strand at 875.466 kb on - strand at 875.466 kb on - strand at 875.598 kb on + strand at 875.599 kb on - strand at 876.303 kb on + strand, within Psest_0801 at 876.303 kb on + strand, within Psest_0801 at 876.303 kb on + strand, within Psest_0801 at 876.304 kb on - strand, within Psest_0801 at 876.304 kb on - strand, within Psest_0801 at 876.304 kb on - strand, within Psest_0801 at 876.304 kb on - strand, within Psest_0801 at 876.304 kb on - strand, within Psest_0801 at 876.304 kb on - strand, within Psest_0801 at 876.444 kb on + strand, within Psest_0801 at 876.445 kb on - strand, within Psest_0801 at 876.445 kb on - strand, within Psest_0801 at 876.445 kb on - strand, within Psest_0801 at 876.558 kb on + strand, within Psest_0801 at 876.558 kb on + strand, within Psest_0801 at 876.559 kb on - strand, within Psest_0801 at 876.819 kb on + strand, within Psest_0801 at 876.819 kb on + strand, within Psest_0801 at 876.819 kb on + strand, within Psest_0801 at 876.820 kb on - strand, within Psest_0801 at 876.820 kb on - strand, within Psest_0801 at 876.972 kb on - strand at 877.073 kb on + strand, within Psest_0802 at 877.074 kb on - strand, within Psest_0802 at 877.074 kb on - strand, within Psest_0802 at 877.082 kb on + strand, within Psest_0802 at 877.160 kb on + strand, within Psest_0802 at 877.218 kb on + strand, within Psest_0802 at 877.218 kb on + strand, within Psest_0802 at 877.218 kb on + strand, within Psest_0802 at 877.218 kb on + strand, within Psest_0802 at 877.289 kb on + strand, within Psest_0802 at 877.289 kb on + strand, within Psest_0802 at 877.289 kb on + strand, within Psest_0802 at 877.289 kb on + strand, within Psest_0802 at 877.289 kb on + strand, within Psest_0802 at 877.289 kb on + strand, within Psest_0802 at 877.290 kb on - strand, within Psest_0802 at 877.290 kb on - strand, within Psest_0802 at 877.290 kb on - strand, within Psest_0802 at 877.290 kb on - strand, within Psest_0802 at 877.290 kb on - strand, within Psest_0802 at 877.290 kb on - strand, within Psest_0802 at 877.290 kb on - strand, within Psest_0802 at 877.290 kb on - strand, within Psest_0802 at 877.290 kb on - strand, within Psest_0802 at 877.290 kb on - strand, within Psest_0802 at 877.295 kb on + strand, within Psest_0802 at 877.295 kb on + strand, within Psest_0802 at 877.295 kb on + strand, within Psest_0802 at 877.295 kb on + strand, within Psest_0802 at 877.295 kb on + strand, within Psest_0802 at 877.295 kb on + strand, within Psest_0802 at 877.296 kb on - strand, within Psest_0802 at 877.296 kb on - strand, within Psest_0802 at 877.296 kb on - strand, within Psest_0802 at 877.374 kb on - strand, within Psest_0802 at 877.495 kb on + strand, within Psest_0802 at 877.622 kb on + strand, within Psest_0802 at 877.622 kb on + strand, within Psest_0802 at 877.623 kb on - strand, within Psest_0802 at 877.743 kb on + strand at 877.743 kb on + strand at 877.855 kb on + strand at 877.855 kb on + strand at 877.855 kb on + strand at 877.855 kb on + strand at 877.856 kb on - strand at 877.856 kb on - strand at 877.856 kb on - strand at 877.856 kb on - strand at 877.883 kb on + strand at 877.884 kb on - strand at 877.887 kb on + strand at 877.887 kb on + strand at 877.887 kb on + strand at 877.887 kb on + strand at 877.887 kb on + strand at 877.888 kb on - strand at 877.888 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrite; anaerobic; sample2 remove 875,078 + Psest_0800 0.46 +0.1 875,078 + Psest_0800 0.46 -0.1 875,079 - Psest_0800 0.46 -0.1 875,175 + Psest_0800 0.59 -0.2 875,175 + Psest_0800 0.59 -0.8 875,175 + Psest_0800 0.59 +0.1 875,175 + Psest_0800 0.59 -0.3 875,175 + Psest_0800 0.59 -0.9 875,175 + Psest_0800 0.59 +0.3 875,175 + Psest_0800 0.59 -0.7 875,175 + Psest_0800 0.59 -0.8 875,176 - Psest_0800 0.59 +1.3 875,176 - Psest_0800 0.59 -0.7 875,176 - Psest_0800 0.59 -0.2 875,176 - Psest_0800 0.59 -0.4 875,176 - Psest_0800 0.59 +0.9 875,176 - Psest_0800 0.59 -0.9 875,178 - Psest_0800 0.60 -0.3 875,249 + Psest_0800 0.69 +0.1 875,465 + -1.0 875,465 + -0.7 875,465 + -1.6 875,465 + +0.2 875,465 + +0.2 875,465 + -0.8 875,466 - -0.2 875,466 - -0.5 875,466 - -1.9 875,466 - +1.1 875,466 - +0.6 875,466 - +2.0 875,466 - -0.8 875,598 + +0.2 875,599 - -0.1 876,303 + Psest_0801 0.43 +0.9 876,303 + Psest_0801 0.43 +0.3 876,303 + Psest_0801 0.43 +0.3 876,304 - Psest_0801 0.43 +1.6 876,304 - Psest_0801 0.43 +0.3 876,304 - Psest_0801 0.43 +1.8 876,304 - Psest_0801 0.43 +1.2 876,304 - Psest_0801 0.43 +0.2 876,304 - Psest_0801 0.43 -0.9 876,444 + Psest_0801 0.55 +0.3 876,445 - Psest_0801 0.55 +0.1 876,445 - Psest_0801 0.55 -1.7 876,445 - Psest_0801 0.55 -0.6 876,558 + Psest_0801 0.65 -0.4 876,558 + Psest_0801 0.65 +0.5 876,559 - Psest_0801 0.66 -0.8 876,819 + Psest_0801 0.88 +0.9 876,819 + Psest_0801 0.88 +1.6 876,819 + Psest_0801 0.88 +0.1 876,820 - Psest_0801 0.88 +1.1 876,820 - Psest_0801 0.88 +2.9 876,972 - +0.4 877,073 + Psest_0802 0.13 -0.9 877,074 - Psest_0802 0.13 +0.4 877,074 - Psest_0802 0.13 -0.8 877,082 + Psest_0802 0.14 -0.1 877,160 + Psest_0802 0.23 +0.4 877,218 + Psest_0802 0.30 +0.5 877,218 + Psest_0802 0.30 +1.8 877,218 + Psest_0802 0.30 -0.1 877,218 + Psest_0802 0.30 -1.5 877,289 + Psest_0802 0.38 -0.0 877,289 + Psest_0802 0.38 +0.7 877,289 + Psest_0802 0.38 -0.6 877,289 + Psest_0802 0.38 +0.4 877,289 + Psest_0802 0.38 +1.4 877,289 + Psest_0802 0.38 -1.6 877,290 - Psest_0802 0.38 +0.4 877,290 - Psest_0802 0.38 +0.1 877,290 - Psest_0802 0.38 -3.0 877,290 - Psest_0802 0.38 -1.6 877,290 - Psest_0802 0.38 -0.2 877,290 - Psest_0802 0.38 +2.2 877,290 - Psest_0802 0.38 -0.4 877,290 - Psest_0802 0.38 -0.7 877,290 - Psest_0802 0.38 +0.6 877,290 - Psest_0802 0.38 -0.1 877,295 + Psest_0802 0.39 -0.2 877,295 + Psest_0802 0.39 +0.4 877,295 + Psest_0802 0.39 -0.4 877,295 + Psest_0802 0.39 +0.4 877,295 + Psest_0802 0.39 +1.4 877,295 + Psest_0802 0.39 +0.1 877,296 - Psest_0802 0.39 -0.2 877,296 - Psest_0802 0.39 +0.2 877,296 - Psest_0802 0.39 +0.6 877,374 - Psest_0802 0.48 -0.2 877,495 + Psest_0802 0.62 +0.6 877,622 + Psest_0802 0.77 -0.1 877,622 + Psest_0802 0.77 -0.2 877,623 - Psest_0802 0.77 +0.4 877,743 + -0.4 877,743 + -0.2 877,855 + +0.8 877,855 + -0.0 877,855 + -0.3 877,855 + -0.0 877,856 - -1.7 877,856 - +1.7 877,856 - -0.5 877,856 - -0.7 877,883 + +0.7 877,884 - -0.9 877,887 + +0.7 877,887 + +0.3 877,887 + -0.5 877,887 + +1.5 877,887 + +0.1 877,888 - +0.0 877,888 - +0.8
Or see this region's nucleotide sequence