Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0681

Experiment: Lactate-nitrite; anaerobic; sample2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0680 and Psest_0681 overlap by 4 nucleotidesPsest_0681 and Psest_0682 are separated by 82 nucleotides Psest_0680: Psest_0680 - N-acetylmuramoyl-L-alanine amidase, at 742,290 to 743,726 _0680 Psest_0681: Psest_0681 - DNA mismatch repair protein MutL, at 743,723 to 745,600 _0681 Psest_0682: Psest_0682 - tRNA dimethylallyltransferase, at 745,683 to 746,654 _0682 Position (kb) 743 744 745 746Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 743.521 kb on - strand, within Psest_0680at 743.920 kb on + strand, within Psest_0681at 744.174 kb on + strand, within Psest_0681at 744.174 kb on + strand, within Psest_0681at 744.194 kb on - strand, within Psest_0681at 744.494 kb on + strand, within Psest_0681at 744.494 kb on + strand, within Psest_0681at 744.494 kb on + strand, within Psest_0681at 744.495 kb on - strand, within Psest_0681at 744.495 kb on - strand, within Psest_0681at 744.500 kb on + strand, within Psest_0681at 744.500 kb on + strand, within Psest_0681at 744.500 kb on + strand, within Psest_0681at 744.500 kb on + strand, within Psest_0681at 744.501 kb on - strand, within Psest_0681at 745.058 kb on + strand, within Psest_0681at 745.058 kb on + strand, within Psest_0681at 745.058 kb on + strand, within Psest_0681at 745.058 kb on + strand, within Psest_0681at 745.058 kb on + strand, within Psest_0681at 745.059 kb on - strand, within Psest_0681at 745.059 kb on - strand, within Psest_0681at 745.059 kb on - strand, within Psest_0681at 745.059 kb on - strand, within Psest_0681at 745.059 kb on - strand, within Psest_0681at 745.059 kb on - strand, within Psest_0681at 745.059 kb on - strand, within Psest_0681at 745.059 kb on - strand, within Psest_0681at 745.059 kb on - strand, within Psest_0681at 745.059 kb on - strand, within Psest_0681at 745.059 kb on - strand, within Psest_0681at 745.059 kb on - strand, within Psest_0681at 745.059 kb on - strand, within Psest_0681at 745.059 kb on - strand, within Psest_0681at 745.060 kb on + strand, within Psest_0681at 745.060 kb on + strand, within Psest_0681at 745.100 kb on - strand, within Psest_0681at 745.128 kb on - strand, within Psest_0681at 745.376 kb on + strand, within Psest_0681at 745.376 kb on + strand, within Psest_0681at 745.376 kb on + strand, within Psest_0681at 745.377 kb on - strand, within Psest_0681at 745.416 kb on + strandat 745.498 kb on + strandat 745.657 kb on - strandat 745.657 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-nitrite; anaerobic; sample2
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743,521 - Psest_0680 0.86 +2.4
743,920 + Psest_0681 0.10 +0.2
744,174 + Psest_0681 0.24 +0.7
744,174 + Psest_0681 0.24 -0.6
744,194 - Psest_0681 0.25 +0.7
744,494 + Psest_0681 0.41 +0.1
744,494 + Psest_0681 0.41 -0.7
744,494 + Psest_0681 0.41 -0.3
744,495 - Psest_0681 0.41 -0.1
744,495 - Psest_0681 0.41 -0.2
744,500 + Psest_0681 0.41 -0.0
744,500 + Psest_0681 0.41 +0.3
744,500 + Psest_0681 0.41 +0.3
744,500 + Psest_0681 0.41 +0.7
744,501 - Psest_0681 0.41 -0.5
745,058 + Psest_0681 0.71 +0.4
745,058 + Psest_0681 0.71 -0.2
745,058 + Psest_0681 0.71 +2.1
745,058 + Psest_0681 0.71 +0.6
745,058 + Psest_0681 0.71 -0.0
745,059 - Psest_0681 0.71 -0.6
745,059 - Psest_0681 0.71 -3.0
745,059 - Psest_0681 0.71 +0.3
745,059 - Psest_0681 0.71 +1.0
745,059 - Psest_0681 0.71 +0.6
745,059 - Psest_0681 0.71 +0.2
745,059 - Psest_0681 0.71 -0.4
745,059 - Psest_0681 0.71 -0.4
745,059 - Psest_0681 0.71 -1.1
745,059 - Psest_0681 0.71 +0.4
745,059 - Psest_0681 0.71 -0.2
745,059 - Psest_0681 0.71 -0.5
745,059 - Psest_0681 0.71 +1.7
745,059 - Psest_0681 0.71 +1.0
745,060 + Psest_0681 0.71 +1.0
745,060 + Psest_0681 0.71 -0.0
745,100 - Psest_0681 0.73 +0.1
745,128 - Psest_0681 0.75 +0.3
745,376 + Psest_0681 0.88 -0.9
745,376 + Psest_0681 0.88 +3.6
745,376 + Psest_0681 0.88 +0.8
745,377 - Psest_0681 0.88 -1.4
745,416 + +2.2
745,498 + -0.2
745,657 - -0.6
745,657 - -2.6

Or see this region's nucleotide sequence