Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4017

Experiment: Lactate-nitrite; anaerobic; sample2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Lactate-nitrite; anaerobic; sample2
4,193,237	+		Psest_4016	0.15	+0.0
4,193,238	-		Psest_4016	0.15	+0.2
4,193,321	+		Psest_4016	0.22	-0.9
4,193,322	-		Psest_4016	0.22	-1.0
4,193,322	-		Psest_4016	0.22	+0.3
4,193,355	+		Psest_4016	0.25	-2.8
4,193,356	-		Psest_4016	0.25	-0.7
4,193,356	-		Psest_4016	0.25	+1.5
4,193,391	+		Psest_4016	0.28	-2.0
4,193,391	+		Psest_4016	0.28	+0.1
4,193,391	+		Psest_4016	0.28	+0.3
4,193,392	-		Psest_4016	0.28	-0.3
4,193,429	+		Psest_4016	0.31	+0.3
4,193,430	-		Psest_4016	0.31	-0.3
4,193,585	-		Psest_4016	0.44	-0.3
4,193,585	-		Psest_4016	0.44	-0.8
4,193,617	+		Psest_4016	0.47	+1.3
4,193,618	-		Psest_4016	0.47	+0.5
4,193,618	-		Psest_4016	0.47	-3.3
4,193,618	-		Psest_4016	0.47	+0.3
4,193,618	-		Psest_4016	0.47	+0.3
4,193,618	-		Psest_4016	0.47	-0.8
4,193,618	-		Psest_4016	0.47	-1.0
4,193,618	-		Psest_4016	0.47	-1.3
4,193,625	+		Psest_4016	0.48	+0.4
4,193,658	+		Psest_4016	0.51	-0.1
4,193,658	+		Psest_4016	0.51	-1.3
4,193,659	-		Psest_4016	0.51	+1.1
4,193,708	+		Psest_4016	0.55	-0.1
4,193,785	-		Psest_4016	0.61	-0.4
4,193,785	-		Psest_4016	0.61	-0.6
4,193,912	+		Psest_4016	0.72	+0.3
4,193,912	+		Psest_4016	0.72	+0.9
4,193,913	-		Psest_4016	0.72	-2.3
4,193,934	+		Psest_4016	0.74	-0.6
4,193,934	+		Psest_4016	0.74	-0.4
4,193,944	+		Psest_4016	0.75	+0.0
4,194,157	+				+1.6
4,194,157	+				+1.1
4,194,157	+				+1.3
4,194,157	+				-0.3
4,194,157	+				+0.2
4,194,157	+				+0.5
4,194,157	+				+0.1
4,194,158	-				-1.2
4,194,158	-				-0.1
4,194,158	-				-0.3
4,194,158	-				-0.5
4,194,158	-				-0.8
4,194,158	-				-0.6
4,194,158	-				+1.4
4,194,158	-				+0.4
4,194,172	+				-0.2
4,194,206	-				-1.0
4,194,227	+				-0.6
4,194,227	+				-0.4
4,194,227	+				-0.7
4,194,227	+				+1.3
4,194,227	+				-0.8
4,194,227	+				+0.1
4,194,227	+				-0.2
4,194,227	+				+0.3
4,194,227	+				+0.3
4,194,227	+				+2.6
4,194,227	+				+0.6
4,194,227	+				-0.4
4,194,228	-				-0.3
4,194,228	-				+0.4
4,194,228	-				+0.2
4,194,228	-				-0.1
4,194,228	-				-0.3
4,194,228	-				-0.5
4,194,228	-				+1.0
4,194,228	-				+0.1
4,194,228	-				-1.3
4,194,235	+				+0.1
4,194,236	-				+1.9
4,194,267	+				-0.0
4,194,268	-				+0.3
4,194,268	-				+0.0
4,194,268	-				+0.3
4,194,268	-				+1.1
4,194,268	-				+0.2
4,194,268	-				+0.6
4,194,268	-				-0.2
4,194,317	+		Psest_4017	0.12	+1.9
4,194,391	+		Psest_4017	0.21	+0.3
4,194,391	+		Psest_4017	0.21	-0.7
4,194,392	-		Psest_4017	0.22	+1.0
4,194,392	-		Psest_4017	0.22	+0.1
4,194,494	+		Psest_4017	0.35	-0.6
4,194,494	+		Psest_4017	0.35	-1.2
4,194,494	+		Psest_4017	0.35	-1.5
4,194,494	+		Psest_4017	0.35	+0.2
4,194,494	+		Psest_4017	0.35	-1.3
4,194,495	-		Psest_4017	0.35	-0.9
4,194,495	-		Psest_4017	0.35	-0.9
4,194,495	-		Psest_4017	0.35	-1.3
4,194,495	-		Psest_4017	0.35	+0.1
4,194,495	-		Psest_4017	0.35	-0.5
4,194,495	-		Psest_4017	0.35	+0.2
4,194,495	-		Psest_4017	0.35	-0.3
4,194,495	-		Psest_4017	0.35	-0.7
4,194,495	-		Psest_4017	0.35	+1.9
4,194,495	-		Psest_4017	0.35	-0.1
4,194,495	-		Psest_4017	0.35	-1.0
4,194,495	-		Psest_4017	0.35	-0.2
4,194,515	-		Psest_4017	0.38	-1.4
4,194,515	-		Psest_4017	0.38	-0.7
4,194,515	-		Psest_4017	0.38	+0.8
4,194,515	-		Psest_4017	0.38	-0.8
4,194,593	+		Psest_4017	0.48	-0.6
4,194,593	+		Psest_4017	0.48	+0.9
4,194,594	-		Psest_4017	0.49	+0.2
4,194,594	-		Psest_4017	0.49	+0.6
4,194,632	+		Psest_4017	0.54	-1.0
4,194,633	-		Psest_4017	0.54	+1.0
4,194,633	-		Psest_4017	0.54	+0.7
4,194,633	-		Psest_4017	0.54	-2.4
4,194,633	-		Psest_4017	0.54	-0.3
4,194,633	-		Psest_4017	0.54	-0.2
4,194,674	-		Psest_4017	0.59	-0.7
4,194,675	+		Psest_4017	0.59	-0.4
4,194,675	+		Psest_4017	0.59	+0.0
4,194,675	+		Psest_4017	0.59	-1.3
4,194,675	+		Psest_4017	0.59	-0.7
4,194,676	-		Psest_4017	0.59	-1.5
4,194,676	-		Psest_4017	0.59	-0.2
4,194,676	-		Psest_4017	0.59	-0.7
4,194,685	+		Psest_4017	0.61	+0.6
4,194,750	+		Psest_4017	0.69	-0.8
4,194,751	-		Psest_4017	0.69	+1.2
4,194,751	-		Psest_4017	0.69	-0.4
4,194,751	-		Psest_4017	0.69	+0.3
4,194,751	-		Psest_4017	0.69	-1.5
4,194,784	+		Psest_4017	0.74	-1.8
4,194,784	+		Psest_4017	0.74	+1.0
4,194,784	+		Psest_4017	0.74	-0.4
4,194,784	+		Psest_4017	0.74	-0.8
4,194,784	+		Psest_4017	0.74	-0.2
4,194,784	+		Psest_4017	0.74	-0.2
4,194,785	-		Psest_4017	0.74	-0.9
4,194,785	-		Psest_4017	0.74	-0.1
4,194,785	-		Psest_4017	0.74	-0.0
4,194,785	-		Psest_4017	0.74	-1.1
4,194,785	-		Psest_4017	0.74	-0.6
4,194,787	+		Psest_4017	0.74	-0.4
4,194,787	+		Psest_4017	0.74	-0.5
4,194,787	+		Psest_4017	0.74	+0.9
4,194,787	+		Psest_4017	0.74	-1.5
4,194,787	+		Psest_4017	0.74	-0.2
4,194,787	+		Psest_4017	0.74	+0.5
4,194,787	+		Psest_4017	0.74	-0.9
4,194,787	+		Psest_4017	0.74	-0.7
4,194,787	+		Psest_4017	0.74	-1.5
4,194,787	+		Psest_4017	0.74	-0.7
4,194,788	-		Psest_4017	0.74	-0.1
4,194,788	-		Psest_4017	0.74	-1.1
4,194,788	-		Psest_4017	0.74	-1.1
4,194,788	-		Psest_4017	0.74	-0.5
4,194,788	-		Psest_4017	0.74	-0.6
4,194,788	-		Psest_4017	0.74	-1.5
4,194,788	-		Psest_4017	0.74	+0.5
4,194,788	-		Psest_4017	0.74	+1.3
4,194,889	+		Psest_4017	0.88	-0.3
4,194,889	+		Psest_4017	0.88	-0.0
4,194,889	+		Psest_4017	0.88	-1.3
4,194,889	+		Psest_4017	0.88	-0.4
4,194,890	-		Psest_4017	0.88	-1.8
4,194,890	-		Psest_4017	0.88	-0.9
4,194,890	-		Psest_4017	0.88	-1.5
4,194,890	-		Psest_4017	0.88	+0.8
4,194,890	-		Psest_4017	0.88	+0.5
4,194,890	-		Psest_4017	0.88	+0.4
4,194,890	-		Psest_4017	0.88	-1.8
4,194,893	+		Psest_4017	0.88	-2.0
4,194,893	+		Psest_4017	0.88	-0.1
4,194,893	+		Psest_4017	0.88	-0.2
4,194,893	+		Psest_4017	0.88	-0.5
4,194,893	+		Psest_4017	0.88	+0.4
4,194,893	+		Psest_4017	0.88	-0.5
4,194,893	+		Psest_4017	0.88	+0.3
4,194,893	+		Psest_4017	0.88	+0.6
4,194,893	+		Psest_4017	0.88	+0.1
4,194,893	+		Psest_4017	0.88	-0.7
4,194,893	+		Psest_4017	0.88	-0.7
4,194,893	+		Psest_4017	0.88	+0.1
4,194,893	+		Psest_4017	0.88	+1.5
4,194,893	+		Psest_4017	0.88	+0.1
4,194,893	+		Psest_4017	0.88	+0.3
4,194,893	+		Psest_4017	0.88	-0.7
4,194,893	+		Psest_4017	0.88	-0.5
4,194,893	+		Psest_4017	0.88	-1.2
4,194,893	+		Psest_4017	0.88	-0.9
4,194,893	+		Psest_4017	0.88	-0.7
4,194,893	+		Psest_4017	0.88	+0.3
4,194,893	+		Psest_4017	0.88	+0.7
4,194,893	+		Psest_4017	0.88	-0.7
4,194,893	+		Psest_4017	0.88	-0.5
4,194,893	+		Psest_4017	0.88	-0.9
4,194,893	+		Psest_4017	0.88	-0.4
4,194,893	+		Psest_4017	0.88	-0.5
4,194,893	+		Psest_4017	0.88	-0.9
4,194,893	+		Psest_4017	0.88	-2.7
4,194,893	+		Psest_4017	0.88	-0.7
4,194,893	+		Psest_4017	0.88	-0.0
4,194,893	+		Psest_4017	0.88	-1.1
4,194,893	+		Psest_4017	0.88	-1.3
4,194,893	+		Psest_4017	0.88	-0.9
4,194,893	+		Psest_4017	0.88	-0.6
4,194,893	+		Psest_4017	0.88	+0.9
4,194,893	+		Psest_4017	0.88	-0.2
4,194,893	+		Psest_4017	0.88	-1.6
4,194,893	+		Psest_4017	0.88	+0.3
4,194,893	+		Psest_4017	0.88	-0.8
4,194,893	+		Psest_4017	0.88	+0.6
4,194,893	+		Psest_4017	0.88	-0.3
4,194,893	+		Psest_4017	0.88	-0.6
4,194,893	+		Psest_4017	0.88	+0.3
4,194,893	+		Psest_4017	0.88	-0.8
4,194,894	-		Psest_4017	0.89	-1.4
4,194,894	-		Psest_4017	0.89	+1.7
4,194,894	-		Psest_4017	0.89	-2.8
4,194,894	-		Psest_4017	0.89	-0.4
4,194,894	-		Psest_4017	0.89	-0.5
4,194,894	-		Psest_4017	0.89	+0.0
4,194,894	-		Psest_4017	0.89	-1.1
4,194,894	-		Psest_4017	0.89	+0.1
4,194,894	-		Psest_4017	0.89	-1.2
4,194,894	-		Psest_4017	0.89	-0.6
4,194,894	-		Psest_4017	0.89	+0.3
4,194,894	-		Psest_4017	0.89	-1.1
4,194,894	-		Psest_4017	0.89	-0.6
4,194,894	-		Psest_4017	0.89	-0.5
4,194,894	-		Psest_4017	0.89	-1.7
4,194,894	-		Psest_4017	0.89	-0.9
4,194,894	-		Psest_4017	0.89	-0.5
4,194,894	-		Psest_4017	0.89	+0.8
4,194,894	-		Psest_4017	0.89	-0.7
4,194,894	-		Psest_4017	0.89	-1.1
4,194,894	-		Psest_4017	0.89	-1.7
4,194,894	-		Psest_4017	0.89	-1.1
4,194,894	-		Psest_4017	0.89	-0.4
4,194,894	-		Psest_4017	0.89	-1.4
4,194,894	-		Psest_4017	0.89	-0.0
4,194,894	-		Psest_4017	0.89	-0.6
4,194,894	-		Psest_4017	0.89	+0.1
4,194,894	-		Psest_4017	0.89	-1.6
4,194,894	-		Psest_4017	0.89	-2.0
4,194,894	-		Psest_4017	0.89	-1.5
4,194,894	-		Psest_4017	0.89	+0.0
4,194,894	-		Psest_4017	0.89	-1.1
4,194,894	-		Psest_4017	0.89	-1.0
4,194,894	-		Psest_4017	0.89	-0.3
4,194,894	-		Psest_4017	0.89	-0.7
4,194,894	-		Psest_4017	0.89	-1.3
4,194,894	-		Psest_4017	0.89	-0.9
4,194,894	-		Psest_4017	0.89	+0.7
4,194,894	-		Psest_4017	0.89	-2.0
4,194,950	+				-2.4
4,194,951	-				-1.5
4,194,951	-				-2.3
4,194,951	-				-0.9
4,194,951	-				-1.5
4,194,977	+				-0.4
4,194,977	+				+0.3
4,194,977	+				-0.7
4,194,977	+				-0.5
4,194,978	-				-0.5
4,194,978	-				+0.1
4,195,013	-				+0.1
4,195,082	+				+0.3
4,195,083	-				+0.8
4,195,083	-				-1.8
4,195,083	-				+1.4
4,195,091	+				-1.3
4,195,092	-				-2.0
4,195,157	-				-0.1
4,195,296	-				-1.9
4,195,400	+				+0.2
4,195,401	-				-0.8
4,195,401	-				-0.7
4,195,406	+				-2.0
4,195,407	-				+1.5
4,195,407	-				-1.0
4,195,407	-				-0.6
4,195,707	+		Psest_4018	0.38	-1.0
4,195,708	-		Psest_4018	0.38	+0.3
4,195,784	+		Psest_4018	0.48	-1.0
4,195,784	+		Psest_4018	0.48	+1.6
4,195,784	+		Psest_4018	0.48	+0.3
4,195,785	-		Psest_4018	0.48	-0.7
4,195,839	+		Psest_4018	0.55	+0.2
4,195,839	+		Psest_4018	0.55	+0.1
4,195,839	+		Psest_4018	0.55	-0.1
4,195,839	+		Psest_4018	0.55	+1.1
4,195,840	-		Psest_4018	0.55	-0.1
4,195,840	-		Psest_4018	0.55	-0.3
4,195,840	-		Psest_4018	0.55	-1.3
4,195,840	-		Psest_4018	0.55	-0.2
4,195,840	-		Psest_4018	0.55	-0.6
4,195,840	-		Psest_4018	0.55	+0.2
4,195,840	-		Psest_4018	0.55	+0.1
4,195,905	+		Psest_4018	0.64	-0.4
4,195,906	-		Psest_4018	0.64	+0.6
4,195,906	-		Psest_4018	0.64	+0.3
4,195,906	-		Psest_4018	0.64	+0.5
4,195,906	-		Psest_4018	0.64	+0.6