Experiment: Lactate-nitrite; anaerobic; sample1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0602 and Psest_0603 are separated by 116 nucleotides
Psest_0602: Psest_0602 - hypothetical protein, at 654,515 to 655,561
_0602
Psest_0603: Psest_0603 - hypothetical protein, at 655,678 to 656,121
_0603
Position (kb) 655
656
657 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 654.754 kb on + strand, within Psest_0602 at 654.774 kb on + strand, within Psest_0602 at 654.775 kb on - strand, within Psest_0602 at 654.794 kb on - strand, within Psest_0602 at 654.794 kb on - strand, within Psest_0602 at 654.794 kb on - strand, within Psest_0602 at 654.807 kb on + strand, within Psest_0602 at 654.857 kb on + strand, within Psest_0602 at 654.871 kb on + strand, within Psest_0602 at 654.874 kb on + strand, within Psest_0602 at 654.874 kb on + strand, within Psest_0602 at 654.875 kb on - strand, within Psest_0602 at 654.981 kb on + strand, within Psest_0602 at 654.981 kb on + strand, within Psest_0602 at 654.981 kb on + strand, within Psest_0602 at 654.989 kb on + strand, within Psest_0602 at 654.989 kb on + strand, within Psest_0602 at 654.990 kb on - strand, within Psest_0602 at 655.038 kb on + strand, within Psest_0602 at 655.038 kb on + strand, within Psest_0602 at 655.038 kb on + strand, within Psest_0602 at 655.038 kb on + strand, within Psest_0602 at 655.038 kb on + strand, within Psest_0602 at 655.039 kb on - strand, within Psest_0602 at 655.039 kb on - strand, within Psest_0602 at 655.084 kb on + strand, within Psest_0602 at 655.101 kb on + strand, within Psest_0602 at 655.102 kb on - strand, within Psest_0602 at 655.114 kb on - strand, within Psest_0602 at 655.203 kb on - strand, within Psest_0602 at 655.279 kb on + strand, within Psest_0602 at 655.279 kb on + strand, within Psest_0602 at 655.360 kb on + strand, within Psest_0602 at 655.392 kb on + strand, within Psest_0602 at 655.392 kb on + strand, within Psest_0602 at 655.451 kb on - strand, within Psest_0602 at 655.483 kb on + strand at 655.486 kb on + strand at 655.509 kb on - strand at 655.546 kb on + strand at 655.567 kb on + strand at 655.568 kb on - strand at 655.626 kb on - strand at 655.804 kb on + strand, within Psest_0603 at 655.804 kb on + strand, within Psest_0603 at 655.804 kb on + strand, within Psest_0603 at 655.804 kb on + strand, within Psest_0603 at 655.804 kb on + strand, within Psest_0603 at 655.804 kb on + strand, within Psest_0603 at 655.804 kb on + strand, within Psest_0603 at 655.804 kb on + strand, within Psest_0603 at 655.804 kb on + strand, within Psest_0603 at 655.804 kb on + strand, within Psest_0603 at 655.804 kb on + strand, within Psest_0603 at 655.804 kb on + strand, within Psest_0603 at 655.804 kb on + strand, within Psest_0603 at 655.805 kb on - strand, within Psest_0603 at 655.805 kb on - strand, within Psest_0603 at 655.805 kb on - strand, within Psest_0603 at 655.805 kb on - strand, within Psest_0603 at 655.805 kb on - strand, within Psest_0603 at 655.805 kb on - strand, within Psest_0603 at 655.805 kb on - strand, within Psest_0603 at 655.805 kb on - strand, within Psest_0603 at 655.805 kb on - strand, within Psest_0603 at 655.805 kb on - strand, within Psest_0603 at 655.805 kb on - strand, within Psest_0603 at 655.805 kb on - strand, within Psest_0603 at 655.805 kb on - strand, within Psest_0603 at 655.806 kb on + strand, within Psest_0603 at 655.806 kb on + strand, within Psest_0603 at 655.806 kb on + strand, within Psest_0603 at 655.807 kb on - strand, within Psest_0603 at 655.807 kb on - strand, within Psest_0603 at 655.807 kb on - strand, within Psest_0603 at 655.807 kb on - strand, within Psest_0603 at 655.828 kb on + strand, within Psest_0603 at 655.828 kb on + strand, within Psest_0603 at 655.858 kb on + strand, within Psest_0603 at 655.858 kb on + strand, within Psest_0603 at 655.868 kb on + strand, within Psest_0603 at 655.868 kb on + strand, within Psest_0603 at 655.869 kb on - strand, within Psest_0603 at 655.869 kb on - strand, within Psest_0603 at 656.049 kb on + strand, within Psest_0603 at 656.049 kb on + strand, within Psest_0603 at 656.066 kb on + strand, within Psest_0603 at 656.087 kb on + strand at 656.088 kb on - strand at 656.088 kb on - strand at 656.167 kb on - strand at 656.167 kb on - strand at 656.255 kb on + strand at 656.256 kb on - strand at 656.256 kb on - strand at 656.302 kb on + strand at 656.321 kb on + strand at 656.321 kb on + strand at 656.321 kb on + strand at 656.328 kb on + strand at 656.328 kb on + strand at 656.328 kb on + strand at 656.398 kb on + strand at 656.398 kb on + strand at 656.398 kb on + strand at 656.399 kb on - strand at 656.399 kb on - strand at 656.412 kb on + strand at 656.412 kb on + strand at 656.412 kb on + strand at 656.412 kb on + strand at 656.413 kb on - strand at 656.427 kb on - strand at 656.478 kb on + strand at 656.478 kb on + strand at 656.478 kb on + strand at 656.479 kb on - strand at 656.479 kb on - strand at 656.479 kb on - strand at 656.479 kb on - strand at 656.571 kb on - strand at 656.574 kb on + strand at 656.575 kb on - strand at 656.575 kb on - strand at 656.575 kb on - strand at 656.575 kb on - strand at 656.575 kb on - strand at 656.575 kb on - strand at 656.575 kb on - strand at 656.575 kb on - strand at 656.575 kb on - strand at 656.575 kb on - strand at 656.575 kb on - strand at 656.575 kb on - strand at 656.651 kb on + strand at 656.652 kb on - strand at 656.652 kb on - strand at 656.688 kb on + strand at 656.689 kb on - strand at 656.703 kb on + strand at 656.742 kb on + strand at 656.742 kb on + strand at 656.742 kb on + strand at 656.742 kb on + strand at 656.742 kb on + strand at 656.742 kb on + strand at 656.742 kb on + strand at 656.742 kb on + strand at 656.743 kb on - strand at 656.743 kb on - strand at 656.743 kb on - strand at 656.817 kb on + strand at 656.818 kb on - strand at 656.818 kb on - strand at 656.876 kb on + strand at 656.876 kb on + strand at 656.876 kb on + strand at 656.877 kb on - strand at 656.877 kb on - strand at 656.877 kb on - strand at 656.877 kb on - strand at 656.904 kb on + strand at 656.964 kb on + strand at 656.964 kb on + strand at 656.964 kb on + strand at 656.964 kb on + strand at 656.964 kb on + strand at 656.965 kb on - strand at 656.965 kb on - strand at 656.965 kb on - strand at 656.965 kb on - strand at 656.965 kb on - strand at 656.965 kb on - strand at 656.965 kb on - strand at 657.031 kb on - strand at 657.031 kb on - strand at 657.081 kb on + strand at 657.081 kb on + strand at 657.081 kb on + strand at 657.081 kb on + strand at 657.081 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-nitrite; anaerobic; sample1 remove 654,754 + Psest_0602 0.23 +0.2 654,774 + Psest_0602 0.25 -0.3 654,775 - Psest_0602 0.25 +1.1 654,794 - Psest_0602 0.27 -1.3 654,794 - Psest_0602 0.27 +2.3 654,794 - Psest_0602 0.27 -0.6 654,807 + Psest_0602 0.28 -1.8 654,857 + Psest_0602 0.33 +1.8 654,871 + Psest_0602 0.34 -0.5 654,874 + Psest_0602 0.34 +0.1 654,874 + Psest_0602 0.34 +1.3 654,875 - Psest_0602 0.34 +0.1 654,981 + Psest_0602 0.45 -1.6 654,981 + Psest_0602 0.45 +1.0 654,981 + Psest_0602 0.45 -0.9 654,989 + Psest_0602 0.45 +1.2 654,989 + Psest_0602 0.45 +1.3 654,990 - Psest_0602 0.45 +0.2 655,038 + Psest_0602 0.50 +1.0 655,038 + Psest_0602 0.50 +0.3 655,038 + Psest_0602 0.50 -1.2 655,038 + Psest_0602 0.50 +0.4 655,038 + Psest_0602 0.50 -0.6 655,039 - Psest_0602 0.50 -1.1 655,039 - Psest_0602 0.50 +1.0 655,084 + Psest_0602 0.54 +1.3 655,101 + Psest_0602 0.56 +1.0 655,102 - Psest_0602 0.56 -0.1 655,114 - Psest_0602 0.57 +2.2 655,203 - Psest_0602 0.66 -2.0 655,279 + Psest_0602 0.73 -1.0 655,279 + Psest_0602 0.73 -0.2 655,360 + Psest_0602 0.81 -1.3 655,392 + Psest_0602 0.84 -0.7 655,392 + Psest_0602 0.84 -0.6 655,451 - Psest_0602 0.89 +0.4 655,483 + +1.6 655,486 + -1.9 655,509 - -1.0 655,546 + -0.2 655,567 + -0.2 655,568 - -0.7 655,626 - -1.6 655,804 + Psest_0603 0.28 -1.6 655,804 + Psest_0603 0.28 +1.4 655,804 + Psest_0603 0.28 -0.1 655,804 + Psest_0603 0.28 -0.6 655,804 + Psest_0603 0.28 +1.4 655,804 + Psest_0603 0.28 +0.8 655,804 + Psest_0603 0.28 -1.2 655,804 + Psest_0603 0.28 -1.2 655,804 + Psest_0603 0.28 -1.2 655,804 + Psest_0603 0.28 -0.7 655,804 + Psest_0603 0.28 -0.8 655,804 + Psest_0603 0.28 -0.2 655,804 + Psest_0603 0.28 +0.4 655,805 - Psest_0603 0.29 +0.2 655,805 - Psest_0603 0.29 -0.3 655,805 - Psest_0603 0.29 -0.4 655,805 - Psest_0603 0.29 -0.5 655,805 - Psest_0603 0.29 -0.5 655,805 - Psest_0603 0.29 -0.4 655,805 - Psest_0603 0.29 +0.4 655,805 - Psest_0603 0.29 +0.1 655,805 - Psest_0603 0.29 -1.9 655,805 - Psest_0603 0.29 +0.3 655,805 - Psest_0603 0.29 -0.2 655,805 - Psest_0603 0.29 -0.4 655,805 - Psest_0603 0.29 -0.7 655,806 + Psest_0603 0.29 -1.1 655,806 + Psest_0603 0.29 -2.3 655,806 + Psest_0603 0.29 -0.1 655,807 - Psest_0603 0.29 -0.2 655,807 - Psest_0603 0.29 -2.4 655,807 - Psest_0603 0.29 +2.2 655,807 - Psest_0603 0.29 -0.8 655,828 + Psest_0603 0.34 -0.2 655,828 + Psest_0603 0.34 -1.8 655,858 + Psest_0603 0.41 +0.7 655,858 + Psest_0603 0.41 +0.0 655,868 + Psest_0603 0.43 +0.3 655,868 + Psest_0603 0.43 +0.4 655,869 - Psest_0603 0.43 +0.2 655,869 - Psest_0603 0.43 -0.1 656,049 + Psest_0603 0.84 +1.7 656,049 + Psest_0603 0.84 -0.5 656,066 + Psest_0603 0.87 -1.2 656,087 + +1.6 656,088 - -0.5 656,088 - +0.0 656,167 - +2.3 656,167 - +0.8 656,255 + -0.1 656,256 - -1.1 656,256 - +0.6 656,302 + -0.7 656,321 + -0.2 656,321 + +0.0 656,321 + -1.2 656,328 + -0.2 656,328 + -0.3 656,328 + -0.2 656,398 + -1.2 656,398 + -0.9 656,398 + -3.0 656,399 - +0.2 656,399 - -0.1 656,412 + -0.3 656,412 + -0.3 656,412 + -1.3 656,412 + -0.7 656,413 - -0.4 656,427 - -1.8 656,478 + +0.3 656,478 + +1.2 656,478 + -0.4 656,479 - -0.4 656,479 - -2.8 656,479 - +0.4 656,479 - +0.1 656,571 - -0.2 656,574 + -1.9 656,575 - -1.5 656,575 - -0.9 656,575 - +0.4 656,575 - +0.0 656,575 - -0.2 656,575 - -1.9 656,575 - -0.1 656,575 - -1.1 656,575 - +0.5 656,575 - -2.2 656,575 - -2.6 656,575 - -0.9 656,651 + +1.0 656,652 - -0.4 656,652 - +0.0 656,688 + -0.9 656,689 - +1.2 656,703 + +1.5 656,742 + +1.0 656,742 + -0.3 656,742 + +0.1 656,742 + -0.4 656,742 + +0.7 656,742 + -1.1 656,742 + -1.9 656,742 + -0.8 656,743 - +1.2 656,743 - +0.3 656,743 - -0.6 656,817 + +0.1 656,818 - +0.1 656,818 - +0.8 656,876 + -1.2 656,876 + -1.2 656,876 + -0.4 656,877 - -0.0 656,877 - -1.4 656,877 - +0.3 656,877 - +0.3 656,904 + -0.5 656,964 + +0.1 656,964 + +4.8 656,964 + -0.6 656,964 + -1.2 656,964 + +0.8 656,965 - +0.2 656,965 - +0.4 656,965 - +0.7 656,965 - -0.3 656,965 - -1.6 656,965 - -0.6 656,965 - +1.4 657,031 - -2.4 657,031 - +0.5 657,081 + -0.5 657,081 + -1.5 657,081 + -0.6 657,081 + -0.1 657,081 + -1.2
Or see this region's nucleotide sequence